RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA314497" and tax_kingdom = "Bacillati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA314497 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28116508 28116508 PRJNA314497_S_NODE_1225_length_205_cov_2.732955_g1202_i0 PRJNA314497 1225 205 2.732955 5.60255775 Lawsonella 1847725 Bacteria Bacteria 121 3.46e-33   NR WP_290595328.1 1847725 g1202 i0 100 0.878048780487805 60 0 87.8 0 205 26 99 158 WP_290595328.1 MULTISPECIES: dUTP diphosphatase [Lawsonella] diamond 180 121 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
28242722 28242722 PRJNA314497_S_NODE_2106_length_151_cov_2.344262_g2083_i0 PRJNA314497 2106 151 2.344262 3.53983562 Anaerococcus lactolyticus 33032 Bacteria Bacteria 93.6 1.32e-20   NR WP_004827534.1 33032 g2083 i0 87.8 0.973509933774834 49 6 97.4 0 150 4 3 51 WP_004827534.1 heavy metal translocating P-type ATPase [Anaerococcus lactolyticus] diamond 147 93.6 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus lactolyticus
30832585 30832585 PRJNA314497_S_NODE_1834_length_162_cov_2.315789_g1811_i0 PRJNA314497 1834 162 2.315789 3.75157818 Peptoniphilus rhinitidis 1175452 Bacteria Bacteria 105 6.82e-25   NR WP_316715316.1 1175452 g1811 i0 100 0.981481481481482 53 0 98.1 0 161 3 467 519 WP_316715316.1 preprotein translocase subunit SecA, partial [Peptoniphilus rhinitidis] diamond 159 105 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus rhinitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;