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contig_metadata

28 rows where analysis = "diamond" and bioproject = "PRJNA314497"

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tax_superkingdom 3

bioproject 1

  • PRJNA314497 · 28 ✖

analysis 1

  • diamond · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16958014 16958014 PRJNA314497_S_NODE_474_length_349_cov_8.743750_g451_i0 PRJNA314497 474 349 8.74375 30.5156875 Culicoides brevitarsis 469753 Arthropoda Arthropoda 187 1.84e-59   NR XP_063703218.1 469753 g451 i0 89.9 0.851002865329513 99 10 85.1 0 14 310 1 99 XP_063703218.1 ATP synthase subunit g, mitochondrial [Culicoides brevitarsis] diamond 297 187 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Ceratopogonidae Culicoides Culicoides brevitarsis
23332624 23332624 PRJNA314497_P_NODE_1199_length_512_cov_2.198758_g1061_i0 PRJNA314497 1199 512 2.198758 11.25764096 Bacteroidota bacterium 1898104 Bacteria Bacteria 367 1.28e-123   NR MBK6986222.1 1898104 g1061 i0 99.4 2.98828125 170 1 99.6 0 3 512 341 510 MBK6986222.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Bacteroidota bacterium] diamond 1530 367 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
24606676 24606676 PRJNA314497_S_NODE_20_length_1327_cov_7.984592_g15_i0 PRJNA314497 20 1327 7.984592 105.95553584 unclassified Undibacterium 2630295 Bacteria Bacteria 323 4.27e-100   NR WP_322119055.1 2630295 g15 i0 63.4 1.81763376036172 279 95 61.9 4 828 7 1 277 WP_322119055.1 MULTISPECIES: chemotaxis protein CheA [unclassified Undibacterium] diamond 2412 323 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium  
26599186 26599186 PRJNA314497_P_NODE_1281_length_492_cov_3.382289_g1142_i0 PRJNA314497 1281 492 3.382289 16.64086188 Elsinoe fawcettii 40997 Fungi Fungi 117 5.37e-27   NR KAF4547717.1 40997 g1142 i0 42 1.68292682926829 138 80 84.1 0 4 417 2349 2486 KAF4547717.1 AMP-binding enzyme 2 [Elsinoe fawcettii] diamond 828 117 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Myriangiales Elsinoaceae Elsinoe Elsinoe fawcettii
26599187 26599187 PRJNA314497_P_NODE_2881_length_306_cov_2.267148_g2730_i0 PRJNA314497 2881 306 2.267148 6.93747288 Pasteurella skyensis 97481 Bacteria Bacteria 135 5.37e-37   NR WP_306400629.1 97481 g2730 i0 65.3 4.72549019607843 95 33 93.1 0 293 9 11 105 WP_306400629.1 IS256 family transposase, variant Zn-binding type, partial [Pasteurella skyensis] diamond 1446 135 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Phocoenobacter Phocoenobacter skyensis
26631189 26631189 PRJNA314497_S_NODE_1521_length_179_cov_2.480000_g1498_i0 PRJNA314497 1521 179 2.48 4.4392 Barbourula kalimantanensis 877557 Chordata Chordata 95.5 1.04e-22   NR ADW79448.1 877557 g1498 i0 97.9 904.206703910615 48 1 80.4 0 178 35 103 150 ADW79448.1 cytochrome oxidase subunit I, partial [Barbourula kalimantanensis] diamond 161853 96.3 0.991692627206646 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Barbourula Barbourula kalimantanensis
27516704 27516704 PRJNA314497_S_NODE_1923_length_159_cov_1.923077_g1900_i0 PRJNA314497 1923 159 1.923077 3.05769243 Helicobacter pylori 210 Bacteria Bacteria 68.2 8.14e-14   NR GAA8554817.1 210 g1900 i0 80 0.754716981132076 40 8 75.5 0 122 3 4 43 GAA8554817.1 hypothetical protein KYTH17_15160 [Helicobacter pylori] diamond 120 68.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27579765 27579765 PRJNA314497_P_NODE_3044_length_295_cov_3.338346_g2892_i0 PRJNA314497 3044 295 3.338346 9.8481207 Geminicoccus harenae 2498453 Bacteria Bacteria 52 1.91e-6   NR WP_222185125.1 2498453 g2892 i0 95.5 0.223728813559322 22 1 22.4 0 293 228 1 22 WP_222185125.1 hypothetical protein, partial [Geminicoccus harenae] diamond 66 52 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Geminicoccales Geminicoccaceae Geminicoccus Geminicoccus harenae
28116508 28116508 PRJNA314497_S_NODE_1225_length_205_cov_2.732955_g1202_i0 PRJNA314497 1225 205 2.732955 5.60255775 Lawsonella 1847725 Bacteria Bacteria 121 3.46e-33   NR WP_290595328.1 1847725 g1202 i0 100 0.878048780487805 60 0 87.8 0 205 26 99 158 WP_290595328.1 MULTISPECIES: dUTP diphosphatase [Lawsonella] diamond 180 121 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
28116509 28116509 PRJNA314497_S_NODE_645_length_296_cov_6.209738_g622_i0 PRJNA314497 645 296 6.209738 18.38082448 Herbaspirillum rubrisubalbicans 80842 Bacteria Bacteria 60.1 3.48e-9   NR WP_237742021.1 80842 g622 i0 65.2 0.466216216216216 46 15 46.6 1 259 122 1 45 WP_237742021.1 hypothetical protein, partial [Herbaspirillum rubrisubalbicans] diamond 138 60.1 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum rubrisubalbicans
28242722 28242722 PRJNA314497_S_NODE_2106_length_151_cov_2.344262_g2083_i0 PRJNA314497 2106 151 2.344262 3.53983562 Anaerococcus lactolyticus 33032 Bacteria Bacteria 93.6 1.32e-20   NR WP_004827534.1 33032 g2083 i0 87.8 0.973509933774834 49 6 97.4 0 150 4 3 51 WP_004827534.1 heavy metal translocating P-type ATPase [Anaerococcus lactolyticus] diamond 147 93.6 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus lactolyticus
28274368 28274368 PRJNA314497_S_NODE_126_length_621_cov_6.712838_g111_i0 PRJNA314497 126 621 6.712838 41.68672398 Mycena metata 1033252 Fungi Fungi 381 1.86e-131   NR KAJ7746270.1 1033252 g111 i0 97.4 0.927536231884058 192 5 92.8 0 2 577 105 296 KAJ7746270.1 Arv1-like family-domain-containing protein [Mycena metata] diamond 576 381 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Mycenaceae Mycena Mycena metata
28621936 28621936 PRJNA314497_S_NODE_507_length_338_cov_5.944984_g484_i0 PRJNA314497 507 338 5.944984 20.09404592 Herbaspirillum rubrisubalbicans 80842 Bacteria Bacteria 60.5 3.9e-9   NR WP_237742021.1 80842 g484 i0 67.9 0.470414201183432 53 15 47 1 106 264 2 52 WP_237742021.1 hypothetical protein, partial [Herbaspirillum rubrisubalbicans] diamond 159 60.5 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum rubrisubalbicans
29127229 29127229 PRJNA314497_S_NODE_229_length_501_cov_7.108051_g208_i0 PRJNA314497 229 501 7.108051 35.61133551 bacterium 1869227 Bacteria Bacteria 97.4 1.27e-21   NR MFN9961035.1 1869227 g208 i0 62.1 0.395209580838323 66 25 39.5 0 303 500 1 66 MFN9961035.1 hypothetical protein [bacterium] diamond 198 97.4 1 Bacteria               bacterium
29348067 29348067 PRJNA314497_P_NODE_3149_length_286_cov_2.190661_g2997_i0 PRJNA314497 3149 286 2.190661 6.26529046 Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14 1797697 Bacteria Bacteria 89.4 2.64e-18   NR OGO93707.1 1797697 g2997 i0 44.4 13.4895104895105 99 51 99.7 1 285 1 382 480 OGO93707.1 MAG: ATP-dependent Clp protease ATP-binding subunit ClpA [Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14] diamond 3858 89.4 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14
29537383 29537383 PRJNA314497_S_NODE_1770_length_165_cov_2.588235_g1747_i0 PRJNA314497 1770 165 2.588235 4.27058775 Malassezia restricta associated totivirus 1 3048757 Viruses Viruses 105 1.43e-24   NR CAI9858976.1 3048757 g1747 i0 98.2 1 55 1 100 0 165 1 555 609 CAI9858976.1 polyprotein, partial [Malassezia restricta associated totivirus 1] diamond 165 105 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Malassezia restricta associated totivirus 1
29916523 29916523 PRJNA314497_P_NODE_3111_length_290_cov_1.854406_g2959_i0 PRJNA314497 3111 290 1.854406 5.3777774 Caudoviricetes sp. 2832643 Viruses Viruses 47.8 9.46e-4   NR DAV81998.1 2832643 g2959 i0 35.6 0.755172413793103 73 46 74.5 1 282 67 15 87 DAV81998.1 MAG TPA: anaerobic ribonucleoside triphosphate reductase [Caudoviricetes sp.] diamond 219 47.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30074176 30074176 PRJNA314497_P_NODE_3992_length_209_cov_1.616667_g3840_i0 PRJNA314497 3992 209 1.616667 3.37883403 Quercus suber 58331 Plants Plants 55.8 5.24e-7   NR KAK7827634.1 58331 g3840 i0 74.2 2.22488038277512 31 5 40.2 1 3 86 295 325 KAK7827634.1 basic form of pathogenesis-related protein 1 [Quercus suber] diamond 465 55.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus suber
30105808 30105808 PRJNA314497_S_NODE_372_length_397_cov_6.013587_g349_i0 PRJNA314497 372 397 6.013587 23.87394039 Culicoides sonorensis 179676 Arthropoda Arthropoda 150 1.55e-44   NR AAU06505.1 179676 g349 i0 84.4 0.581863979848867 77 12 58.2 0 352 122 1 77 AAU06505.1 unknown salivary protein [Culicoides sonorensis] diamond 231 150 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Ceratopogonidae Culicoides Culicoides sonorensis
30832585 30832585 PRJNA314497_S_NODE_1834_length_162_cov_2.315789_g1811_i0 PRJNA314497 1834 162 2.315789 3.75157818 Peptoniphilus rhinitidis 1175452 Bacteria Bacteria 105 6.82e-25   NR WP_316715316.1 1175452 g1811 i0 100 0.981481481481482 53 0 98.1 0 161 3 467 519 WP_316715316.1 preprotein translocase subunit SecA, partial [Peptoniphilus rhinitidis] diamond 159 105 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus rhinitidis
31306593 31306593 PRJNA314497_S_NODE_455_length_356_cov_6.348624_g432_i0 PRJNA314497 455 356 6.348624 22.60110144 Thrips palmi 161013 Arthropoda Arthropoda 48.1 0.00175   NR XP_034240145.1 161013 g432 i0 33.3 0.758426966292135 90 55 74.2 2 83 346 805 891 XP_034240145.1 uncharacterized protein LOC117644643 [Thrips palmi] diamond 270 48.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Thysanoptera Thripidae Thrips Thrips palmi
31703727 31703727 PRJNA314497_S_NODE_1277_length_200_cov_2.736842_g1254_i0 PRJNA314497 1277 200 2.736842 5.473684 Chordata 7711 Chordata Chordata 99 2.81e-22   NR NP_033640.1 7748 g1254 i0 74.2 264.3 66 17 99 0 2 199 252 317 NP_033640.1 cytochrome c oxidase subunit I [Lampetra fluviatilis] diamond 52860 99 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
31798394 31798394 PRJNA314497_P_NODE_497_length_772_cov_5.759085_g406_i0 PRJNA314497 497 772 5.759085 44.4601362 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 108 1.33e-22   NR XP_004367756.1 1257118 g406 i0 35.3 1.39507772020725 201 94 64.5 6 262 759 540 739 XP_004367756.1 BAG domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1077 109 0.990825688073395 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32097433 32097433 PRJNA314497_P_NODE_3918_length_215_cov_1.682796_g3766_i0 PRJNA314497 3918 215 1.682796 3.6180114 Solanum lycopersicum 4081 Plants Plants 61.2 1.04e-9   NR XP_069148200.1 4081 g3766 i0 61.7 1.29767441860465 47 18 65.6 0 177 37 10 56 XP_069148200.1 uncharacterized protein [Solanum lycopersicum] diamond 279 61.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
32192482 32192482 PRJNA314497_S_NODE_1958_length_157_cov_2.234375_g1935_i0 PRJNA314497 1958 157 2.234375 3.50796875 Phyllosticta citricarpa 55181 Fungi Fungi 45.8 9.57e-4   NR KAK7540103.1 55181 g1935 i0 70.4 1.5477707006369399 27 8 51.6 0 2 82 569 595 KAK7540103.1 hypothetical protein IWX46DRAFT_606636 [Phyllosticta citricarpa] diamond 243 45.8 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Botryosphaeriales Phyllostictaceae Phyllosticta Phyllosticta citricarpa
32336708 32336708 PRJNA314497_S_NODE_1519_length_179_cov_2.773333_g1496_i0 PRJNA314497 1519 179 2.773333 4.96426607 Marinobacter 2742 Bacteria Bacteria 117 5.57e-30   NR WP_273017580.1 83889 g1496 i0 91.5 4.94413407821229 59 5 98.9 0 2 178 74 132 WP_273017580.1 MULTISPECIES: polysaccharide deacetylase family protein [unclassified Marinobacter] diamond 885 117 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter  
32666462 32666462 PRJNA314497_P_NODE_4820_length_162_cov_1.654135_g4668_i0 PRJNA314497 4820 162 1.654135 2.6796987 Scheffersomyces stipitis 4924 Fungi Fungi 58.2 3.85e-8   NR KAG2732346.1 4924 g4668 i0 60 2.5 45 18 83.3 0 161 27 258 302 KAG2732346.1 hypothetical protein G9P44_004763 [Scheffersomyces stipitis] diamond 405 58.2 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Scheffersomyces Scheffersomyces stipitis
32760961 32760961 PRJNA314497_S_NODE_980_length_236_cov_2.507246_g957_i0 PRJNA314497 980 236 2.507246 5.91710056 Eleutherodactylus atkinsi 448426 Chordata Chordata 88.6 2.32e-18   NR AGN71168.1 448426 g957 i0 97.5 14.7457627118644 40 1 50.8 0 102 221 410 449 AGN71168.1 cytochrome c oxidase subunit I [Eleutherodactylus atkinsi] diamond 3480 89 0.995505617977528 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus atkinsi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;