RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA312899" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312899 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10583353 10583353 PRJNA312899_P_NODE_36489_length_299_cov_3.672000_g36047_i0 PRJNA312899 36489 299 3.672 10.97928 Mycoplasma sp. ATU-Cv-7 2108 Bacteria Bacteria 88.6 1.46e-18   NR WP_161565545.1 2498595 g36047 i0 45.8 0.963210702341137 96 52 96.3 0 2 289 22 117 WP_161565545.1 glycosyltransferase [Mycoplasma sp. ATU-Cv-703] diamond 288 88.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. ATU-Cv-703
30706090 30706090 PRJNA312899_P_NODE_73834_length_187_cov_1.891304_g73392_i0 PRJNA312899 73834 187 1.891304 3.53673848 Acholeplasma sp. 33015 Bacteria Bacteria 82 2.45e-16   NR HEY8405251.1 33015 g73392 i0 75 0.898395721925134 56 14 89.8 0 3 170 252 307 HEY8405251.1 hypothetical protein [Acholeplasma sp.] diamond 168 82 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
31085383 31085383 PRJNA312899_P_NODE_51635_length_241_cov_2.125000_g51193_i0 PRJNA312899 51635 241 2.125 5.12125 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 99.8 2.45e-24   NR MCK9235887.1 1898209 g51193 i0 62.1 1.08298755186722 87 26 99.6 2 2 241 5 91 MCK9235887.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 261 99.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32589678 32589678 PRJNA312899_P_NODE_73079_length_188_cov_1.467626_g72637_i0 PRJNA312899 73079 188 1.467626 2.75913688 Bacillati 1783272 Bacteria Bacteria 99.8 1.1e-22   NR WP_035368026.1 264636 g72637 i0 72.6 2.96808510638298 62 17 98.9 0 188 3 194 255 WP_035368026.1 ATP-dependent nuclease [Acholeplasma hippikon] diamond 558 100 0.998 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma hippikon
32792221 32792221 PRJNA312899_P_NODE_86480_length_167_cov_0.864407_g86038_i0 PRJNA312899 86480 167 0.864407 1.44355969 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 49.3 2.78e-5   NR MFA5068151.1 3018265 g86038 i0 50 2.78443113772455 52 25 91.6 1 165 13 71 122 MFA5068151.1 PcfJ domain-containing protein [Candidatus Izemoplasmatales bacterium] diamond 465 49.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;