RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA312899" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA312899 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13133467 13133467 PRJNA312899_P_NODE_50671_length_244_cov_2.092308_g50229_i0 PRJNA312899 50671 244 2.092308 5.10523152 Fusobacterium 848 Bacteria Bacteria 114 1.56e-29   NR WP_176829082.1 852 g50229 i0 75 3.60245901639344 76 19 93.4 0 229 2 1 76 WP_176829082.1 ABC transporter ATP-binding protein [Fusobacterium perfoetens] diamond 879 114 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens
27692354 27692354 PRJNA312899_P_NODE_97464_length_163_cov_0.894737_g97022_i0 PRJNA312899 97464 163 0.894737 1.45842131 Fusobacteriota 32066 Bacteria Bacteria 49.7 4.34e-5   NR WP_408634692.1 157692 g97022 i0 44 2.85276073619632 50 28 92 0 152 3 238 287 WP_408634692.1 DKNYY domain-containing protein [Pseudoleptotrichia goodfellowii] diamond 465 50.1 0.992015968063872 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
28621919 28621919 PRJNA312899_P_NODE_79127_length_180_cov_1.557252_g78685_i0 PRJNA312899 79127 180 1.557252 2.8030536 Leptotrichiaceae bacterium 2782225 Bacteria Bacteria 91.3 6.78e-20   NR MBP6103414.1 2782225 g78685 i0 100 0.816666666666667 49 0 81.7 0 148 2 1 49 MBP6103414.1 RNA polymerase sigma factor RpoD [Leptotrichiaceae bacterium] diamond 147 91.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae   Leptotrichiaceae bacterium
32002562 32002562 PRJNA312899_P_NODE_56538_length_227_cov_2.095506_g56096_i0 PRJNA312899 56538 227 2.095506 4.75679862 Fusobacteriota bacterium 2060921 Bacteria Bacteria 151 1.56e-40   NR MEN9438552.1 2060921 g56096 i0 100 0.991189427312775 75 0 99.1 0 1 225 117 191 MEN9438552.1 hypothetical protein [Fusobacteriota bacterium] diamond 225 151 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium
32823969 32823969 PRJNA312899_P_NODE_5460_length_782_cov_22.424284_g5141_i0 PRJNA312899 5460 782 22.424284 175.35790088 Cetobacterium somerae 188913 Bacteria Bacteria 457 1.5499999999999994e-160   NR WP_257164328.1 188913 g5141 i0 91.5 0.997442455242967 260 22 99.7 0 781 2 20 279 WP_257164328.1 relaxase/mobilization nuclease domain-containing protein [Cetobacterium somerae] diamond 780 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;