RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA312107" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA312107 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28481432 28481432 PRJNA312107_P_NODE_18786_length_169_cov_0.866667_g18620_i0 PRJNA312107 18786 169 0.866667 1.46466723 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 74.3 9.69e-14   NR KAL4453236.1 5901 g18620 i0 81.8 1.56213017751479 44 8 78.1 0 164 33 492 535 KAL4453236.1 hypothetical protein ABPG73_022091 [Tetrahymena malaccensis] diamond 264 74.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
28905666 28905666 PRJNA312107_P_NODE_19708_length_168_cov_0.873950_g19542_i0 PRJNA312107 19708 168 0.87395 1.468236 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 118 3.67e-29   NR CDW71673.1 5949 g19542 i0 94.5 0.982142857142857 55 3 98.2 0 2 166 538 592 CDW71673.1 ubiquitin-activating enzyme e1 family protein [Stylonychia lemnae] diamond 165 118 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;