RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA312107" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312107 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26662422 26662422 PRJNA312107_P_NODE_14941_length_189_cov_1.285714_g14775_i0 PRJNA312107 14941 189 1.285714 2.42999946 Armatimonadota bacterium 2033014 Bacteria Bacteria 80.1 7.43e-16   NR HOK53552.1 2033014 g14775 i0 66.7 0.952380952380952 60 20 95.2 0 5 184 193 252 HOK53552.1 hypothetical protein [Armatimonadota bacterium] diamond 180 80.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27281601 27281601 PRJNA312107_P_NODE_24183_length_164_cov_0.904348_g24017_i0 PRJNA312107 24183 164 0.904348 1.48313072 Armatimonas 1042315 Bacteria Bacteria 74.7 6.76e-14   NR WP_184203698.1 685828 g24017 i0 78.2 2.94512195121951 55 10 98.8 2 1 162 608 661 WP_184203698.1 S41 family peptidase [Armatimonas rosea] diamond 483 75.1 0.994673768308922 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas rosea
28558727 28558727 PRJNA312107_P_NODE_22087_length_166_cov_0.888889_g21921_i0 PRJNA312107 22087 166 0.888889 1.47555574 Armatimonadota bacterium 2033014 Bacteria Bacteria 101 8.82e-24   NR MFN3652486.1 2033014 g21921 i0 81.5 0.975903614457831 54 10 97.6 0 164 3 176 229 MFN3652486.1 DUF58 domain-containing protein [Armatimonadota bacterium] diamond 162 101 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32160884 32160884 PRJNA312107_P_NODE_16838_length_178_cov_1.418605_g16672_i0 PRJNA312107 16838 178 1.418605 2.5251169 Armatimonadota bacterium 2033014 Bacteria Bacteria 101 2.82e-23   NR MEI8281870.1 2033014 g16672 i0 78 1.98876404494382 59 13 99.4 0 2 178 276 334 MEI8281870.1 S41 family peptidase [Armatimonadota bacterium] diamond 354 101 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;