RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA312107" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJNA312107 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28007972 28007972 PRJNA312107_P_NODE_19565_length_168_cov_0.873950_g19399_i0 PRJNA312107 19565 168 0.87395 1.468236 Archaea 2157 Archaea Archaea 70.9 1.6e-12   NR MBI3639254.1 2026795 g19399 i0 61.5 1.85714285714286 52 20 92.9 0 160 5 753 804 MBI3639254.1 SBBP repeat-containing protein [Nitrososphaerota archaeon] diamond 312 71.2 0.995786516853933 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28590318 28590318 PRJNA312107_P_NODE_18327_length_170_cov_1.462810_g18161_i0 PRJNA312107 18327 170 1.46281 2.486777 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 48.5 1.15e-4   NR TRO51923.1 2026714 g18161 i0 48.1 0.917647058823529 52 26 90 1 18 170 104 155 TRO51923.1 hypothetical protein E2P63_04395 [Candidatus Bathyarchaeota archaeon] diamond 156 48.5 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
29252948 29252948 PRJNA312107_P_NODE_21289_length_166_cov_1.777778_g21123_i0 PRJNA312107 21289 166 1.777778 2.95111148 Nitrosopumilus sp. 2024843 Archaea Archaea 77.4 6.68e-15   NR MEK0324821.1 2024843 g21123 i0 63.6 2.98192771084337 55 20 99.4 0 2 166 131 185 MEK0324821.1 hypothetical protein [Nitrosopumilus sp.] diamond 495 77.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
30769429 30769429 PRJNA312107_P_NODE_18634_length_169_cov_0.866667_g18468_i0 PRJNA312107 18634 169 0.866667 1.46466723 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 52 6.84e-6   NR MEM3077620.1 2507556 g18468 i0 46.3 0.958579881656805 54 29 95.9 0 164 3 24 77 MEM3077620.1 hypothetical protein [Candidatus Nitrosotenuis sp.] diamond 162 52 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;