RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA312107" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA312107 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27105689 27105689 PRJNA312107_P_NODE_9082_length_238_cov_1.015873_g8916_i0 PRJNA312107 9082 238 1.015873 2.41777774 Trypanosoma rangeli SC58 429131 Euglenozoa other_Eukaryota 44.7 0.00503   NR ESL05026.1 429131 g8916 i0 63.6 0.415966386554622 33 11 40.3 1 181 86 43 75 ESL05026.1 hypothetical protein TRSC58_07379 [Trypanosoma rangeli SC58] diamond 99 44.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
31306528 31306528 PRJNA312107_P_NODE_19615_length_168_cov_0.873950_g19449_i0 PRJNA312107 19615 168 0.87395 1.468236 Bodo saltans 75058 Euglenozoa other_Eukaryota 65.1 1.74e-10   NR CUG82499.1 75058 g19449 i0 91.2 0.607142857142857 34 3 60.7 0 167 66 1773 1806 CUG82499.1 ATP-dependent DEAD/DEAH box RNA helicase, RecQ, putative [Bodo saltans] diamond 102 65.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;