RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30737625 30737625 PRJNA309466_P_NODE_16674_length_166_cov_0.888889_g16617_i0 PRJNA309466 16674 166 0.888889 1.47555574 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 85.9 8.13e-18   NR KAF4038961.1 4787 g16617 i0 74.1 3.90361445783133 54 14 97.6 0 2 163 74 127 KAF4038961.1 hypothetical protein GN244_ATG08951 [Phytophthora infestans] diamond 648 85.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
31274912 31274912 PRJNA309466_P_NODE_17595_length_163_cov_1.657895_g17538_i0 PRJNA309466 17595 163 1.657895 2.70236885 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 48.1 1.53e-4   NR GMF39275.1 1490495 g17538 i0 71.4 2.30061349693252 35 10 64.4 0 9 113 192 226 GMF39275.1 unnamed protein product [Phytophthora fragariaefolia] diamond 375 48.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;