RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2338201 2338201 PRJNA309466_P_NODE_12582_length_183_cov_1.641791_g12525_i0 PRJNA309466 12582 183 1.641791 3.00447753 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 103 5.899999999999999e-26   NR CDW85556.1 5949 g12525 i0 76.3 29.7540983606557 59 14 96.7 0 3 179 9 67 CDW85556.1 arf family gtpase [Stylonychia lemnae] diamond 5445 103 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
7441105 7441105 PRJNA309466_P_NODE_5666_length_245_cov_15.464286_g5609_i0 PRJNA309466 5666 245 15.464286 37.8875007 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 59.3 5.38e-8   NR CDW89887.1 5949 g5609 i0 46.3 0.979591836734694 80 36 93.1 2 244 17 311 387 CDW89887.1 UNKNOWN [Stylonychia lemnae] diamond 240 59.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28716530 28716530 PRJNA309466_P_NODE_18227_length_162_cov_0.920354_g18170_i0 PRJNA309466 18227 162 0.920354 1.49097348 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 100 9.85e-25   NR CDW90439.1 5949 g18170 i0 86.5 0.962962962962963 52 7 96.3 0 158 3 23 74 CDW90439.1 UNKNOWN [Stylonychia lemnae] diamond 156 100 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32224064 32224064 PRJNA309466_P_NODE_19378_length_154_cov_7.523810_g19321_i0 PRJNA309466 19378 154 7.52381 11.5866674 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 66.6 3.48e-12   NR CDW82153.1 5949 g19321 i0 80.5 0.798701298701299 41 8 79.9 0 25 147 2 42 CDW82153.1 40s ribosomal protein s16-like [Stylonychia lemnae] diamond 123 66.6 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;