RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7441061 7441061 PRJNA309466_P_NODE_3546_length_314_cov_2.569811_g3490_i0 PRJNA309466 3546 314 2.569811 8.06920654 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 189 7.109999999999998e-54   NR YP_009118054.1 372086 g3490 i0 92.8 0.926751592356688 97 7 92.7 0 311 21 93 189 YP_009118054.1 cytochrome c oxidase subunit 1 and subunit 2 fusion protein [Paracercomonas marina] diamond 291 189 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
7441093 7441093 PRJNA309466_P_NODE_5186_length_254_cov_2.765854_g5129_i0 PRJNA309466 5186 254 2.765854 7.02526916 Phaeophyceae 2870 SAR_Eukaryotes SAR_Eukaryotes 92.4 2.58e-20   NR YP_009118060.1 372086 g5129 i0 61 24.2125984251969 82 32 96.9 0 253 8 79 160 YP_009118060.1 cytochrome c oxidase subunit 3 [Paracercomonas marina] diamond 6150 93.2 0.991416309012876 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
26852998 26852998 PRJNA309466_P_NODE_16461_length_166_cov_1.760684_g16404_i0 PRJNA309466 16461 166 1.760684 2.92273544 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 103 8.06e-25   NR YP_009118062.1 372086 g16404 i0 100 0.957831325301205 53 0 95.8 0 165 7 214 266 YP_009118062.1 NADH dehydrogenase subunit 1 [Paracercomonas marina] diamond 159 103 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;