RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_phylum = "Candidatus Daviesiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Daviesiibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27832310 27832310 PRJNA309466_P_NODE_5464_length_249_cov_2.805000_g5407_i0 PRJNA309466 5464 249 2.805 6.98445 Candidatus Daviesbacteria bacterium GW2 2053542 Bacteria Bacteria 112 2.04e-28   NR KKQ15954.1 1618417 g5407 i0 74.3 0.843373493975904 70 18 84.3 0 218 9 47 116 KKQ15954.1 MAG: 50S ribosomal protein L25 [Candidatus Daviesbacteria bacterium GW2011_GWA1_36_8] diamond 210 112 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium GW2011_GWA1_36_8
27863820 27863820 PRJNA309466_P_NODE_12345_length_184_cov_3.533333_g12288_i0 PRJNA309466 12345 184 3.533333 6.50133272 Candidatus Daviesbacteria bacterium 2053542 Bacteria Bacteria 62.4 1.96e-9   NR MBI2593738.1 2053542 g12288 i0 58.8 0.831521739130435 51 21 83.2 0 156 4 232 282 MBI2593738.1 Glu/Leu/Phe/Val dehydrogenase [Candidatus Daviesbacteria bacterium] diamond 153 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium
30390632 30390632 PRJNA309466_P_NODE_4093_length_286_cov_6.345992_g4037_i0 PRJNA309466 4093 286 6.345992 18.14953712 Candidatus Daviesbacteria bacterium 2053542 Bacteria Bacteria 79.3 8.18e-15   NR MBI3485584.1 2053542 g4037 i0 42.9 2.88461538461538 91 52 95.5 0 275 3 103 193 MBI3485584.1 VanW family protein [Candidatus Daviesbacteria bacterium] diamond 825 79.3 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;