RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28905663 28905663 PRJNA309466_P_NODE_14168_length_175_cov_1.515873_g14111_i0 PRJNA309466 14168 175 1.515873 2.65277775 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 65.5 1.45e-10   NR KAI2507182.1 210448 g14111 i0 62.5 0.96 56 20 96 1 169 2 1521 1575 KAI2507182.1 Reverse transcriptase (RNA-dependent DNA polymerase) [Fragilaria crotonensis] diamond 168 65.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
30485046 30485046 PRJNA309466_P_NODE_14313_length_174_cov_2.816000_g14256_i0 PRJNA309466 14313 174 2.816 4.89984 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.49e-4   NR CAB9521594.1 568900 g14256 i0 41.7 0.827586206896552 48 28 82.8 0 30 173 191 238 CAB9521594.1 Reverse transcriptase (RNA-dependent DNA polymerase) (Partial), partial [Seminavis robusta] diamond 144 47.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;