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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA309466" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA309466 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2338201 2338201 PRJNA309466_P_NODE_12582_length_183_cov_1.641791_g12525_i0 PRJNA309466 12582 183 1.641791 3.00447753 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 103 5.899999999999999e-26   NR CDW85556.1 5949 g12525 i0 76.3 29.7540983606557 59 14 96.7 0 3 179 9 67 CDW85556.1 arf family gtpase [Stylonychia lemnae] diamond 5445 103 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
7441061 7441061 PRJNA309466_P_NODE_3546_length_314_cov_2.569811_g3490_i0 PRJNA309466 3546 314 2.569811 8.06920654 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 189 7.109999999999998e-54   NR YP_009118054.1 372086 g3490 i0 92.8 0.926751592356688 97 7 92.7 0 311 21 93 189 YP_009118054.1 cytochrome c oxidase subunit 1 and subunit 2 fusion protein [Paracercomonas marina] diamond 291 189 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
7441093 7441093 PRJNA309466_P_NODE_5186_length_254_cov_2.765854_g5129_i0 PRJNA309466 5186 254 2.765854 7.02526916 Phaeophyceae 2870 SAR_Eukaryotes SAR_Eukaryotes 92.4 2.58e-20   NR YP_009118060.1 372086 g5129 i0 61 24.2125984251969 82 32 96.9 0 253 8 79 160 YP_009118060.1 cytochrome c oxidase subunit 3 [Paracercomonas marina] diamond 6150 93.2 0.991416309012876 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
7441105 7441105 PRJNA309466_P_NODE_5666_length_245_cov_15.464286_g5609_i0 PRJNA309466 5666 245 15.464286 37.8875007 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 59.3 5.38e-8   NR CDW89887.1 5949 g5609 i0 46.3 0.979591836734694 80 36 93.1 2 244 17 311 387 CDW89887.1 UNKNOWN [Stylonychia lemnae] diamond 240 59.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
26662417 26662417 PRJNA309466_P_NODE_15361_length_169_cov_3.533333_g15304_i0 PRJNA309466 15361 169 3.533333 5.97133277 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 47.4 2.74e-4   NR KAJ1443472.1 483371 g15304 i0 64.7 0.603550295857988 34 12 60.4 0 3 104 7 40 KAJ1443472.1 hypothetical protein B484DRAFT_1231, partial [Ochromonadaceae sp. CCMP2298] diamond 102 47.4 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
26852998 26852998 PRJNA309466_P_NODE_16461_length_166_cov_1.760684_g16404_i0 PRJNA309466 16461 166 1.760684 2.92273544 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 103 8.06e-25   NR YP_009118062.1 372086 g16404 i0 100 0.957831325301205 53 0 95.8 0 165 7 214 266 YP_009118062.1 NADH dehydrogenase subunit 1 [Paracercomonas marina] diamond 159 103 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
28716530 28716530 PRJNA309466_P_NODE_18227_length_162_cov_0.920354_g18170_i0 PRJNA309466 18227 162 0.920354 1.49097348 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 100 9.85e-25   NR CDW90439.1 5949 g18170 i0 86.5 0.962962962962963 52 7 96.3 0 158 3 23 74 CDW90439.1 UNKNOWN [Stylonychia lemnae] diamond 156 100 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28905663 28905663 PRJNA309466_P_NODE_14168_length_175_cov_1.515873_g14111_i0 PRJNA309466 14168 175 1.515873 2.65277775 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 65.5 1.45e-10   NR KAI2507182.1 210448 g14111 i0 62.5 0.96 56 20 96 1 169 2 1521 1575 KAI2507182.1 Reverse transcriptase (RNA-dependent DNA polymerase) [Fragilaria crotonensis] diamond 168 65.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
30485046 30485046 PRJNA309466_P_NODE_14313_length_174_cov_2.816000_g14256_i0 PRJNA309466 14313 174 2.816 4.89984 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.49e-4   NR CAB9521594.1 568900 g14256 i0 41.7 0.827586206896552 48 28 82.8 0 30 173 191 238 CAB9521594.1 Reverse transcriptase (RNA-dependent DNA polymerase) (Partial), partial [Seminavis robusta] diamond 144 47.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
30737625 30737625 PRJNA309466_P_NODE_16674_length_166_cov_0.888889_g16617_i0 PRJNA309466 16674 166 0.888889 1.47555574 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 85.9 8.13e-18   NR KAF4038961.1 4787 g16617 i0 74.1 3.90361445783133 54 14 97.6 0 2 163 74 127 KAF4038961.1 hypothetical protein GN244_ATG08951 [Phytophthora infestans] diamond 648 85.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
31274912 31274912 PRJNA309466_P_NODE_17595_length_163_cov_1.657895_g17538_i0 PRJNA309466 17595 163 1.657895 2.70236885 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 48.1 1.53e-4   NR GMF39275.1 1490495 g17538 i0 71.4 2.30061349693252 35 10 64.4 0 9 113 192 226 GMF39275.1 unnamed protein product [Phytophthora fragariaefolia] diamond 375 48.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia
32224064 32224064 PRJNA309466_P_NODE_19378_length_154_cov_7.523810_g19321_i0 PRJNA309466 19378 154 7.52381 11.5866674 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 66.6 3.48e-12   NR CDW82153.1 5949 g19321 i0 80.5 0.798701298701299 41 8 79.9 0 25 147 2 42 CDW82153.1 40s ribosomal protein s16-like [Stylonychia lemnae] diamond 123 66.6 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;