RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA306153" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA306153 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28211049 28211049 PRJNA306153_S_NODE_2046_length_174_cov_2.262069_g2033_i0 PRJNA306153 2046 174 2.262069 3.93600006 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 65.1 1.73e-10   NR XP_001012596.1 312017 g2033 i0 56.9 2.98275862068966 58 22 98.3 2 174 4 191 246 XP_001012596.1 papain family cysteine protease [Tetrahymena thermophila SB210] diamond 519 65.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30313517 30313517 PRJNA306153_S_NODE_2652_length_154_cov_4.600000_g2639_i0 PRJNA306153 2652 154 4.6 7.084 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.00795   NR OMJ68960.1 5963 g2639 i0 48.3 4.24675324675325 29 15 56.5 0 66 152 184 212 OMJ68960.1 hypothetical protein SteCoe_33440 [Stentor coeruleus] diamond 654 43.1 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;