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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA306153" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 14 ✖

bioproject 1

  • PRJNA306153 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9304421 9304421 PRJNA306153_S_NODE_2528_length_157_cov_3.679688_g2515_i0 PRJNA306153 2528 157 3.679688 5.77711016 Magnoliopsida 3398 Plants Plants 101 9e-26   NR XP_024981471.1 59895 g2515 i0 82.7 5.96178343949045 52 9 99.4 0 2 157 27 78 XP_024981471.1 40S ribosomal protein S19-1-like [Cynara cardunculus var. scolymus] diamond 936 102 0.990196078431373 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Cynara Cynara cardunculus
14405345 14405345 PRJNA306153_S_NODE_132_length_537_cov_4.322835_g122_i0 PRJNA306153 132 537 4.322835 23.21362395 Hordeum vulgare subsp. vulgare 112509 Plants Plants 211 7.98e-66   NR BAJ99030.1 112509 g122 i0 65.2 0.994413407821229 178 62 99.4 0 536 3 11 188 BAJ99030.1 predicted protein [Hordeum vulgare subsp. vulgare] diamond 534 211 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
14405354 14405354 PRJNA306153_S_NODE_332_length_381_cov_3.468750_g319_i0 PRJNA306153 332 381 3.46875 13.2159375 Selaginella moellendorffii 88036 Plants Plants 160 2.0899999999999999e-47   NR XP_002988167.1 88036 g319 i0 72.2 4.41732283464567 108 30 85 0 11 334 54 161 XP_002988167.1 60S ribosomal protein L12 [Selaginella moellendorffii] diamond 1683 160 1 Eukaryota Embryophyta Viridiplantae Streptophyta Lycopodiopsida Selaginellales Selaginellaceae Selaginella Selaginella moellendorffii
16953728 16953728 PRJNA306153_S_NODE_354_length_370_cov_4.809384_g341_i0 PRJNA306153 354 370 4.809384 17.7947208 Brassicaceae 3700 Plants Plants 126 5.53e-32   NR KAH0912220.1 3708 g341 i0 68.5 8.11621621621622 92 27 74.6 1 370 95 290 379 KAH0912220.1 hypothetical protein HID58_035541 [Brassica napus] diamond 3003 127 0.992125984251969 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
26789517 26789517 PRJNA306153_S_NODE_901_length_251_cov_3.891892_g888_i0 PRJNA306153 901 251 3.891892 9.76864892 Lotus japonicus 34305 Plants Plants 156 1.78e-45   NR AFK41760.1 34305 g888 i0 91.6 0.99203187250996006 83 7 99.2 0 250 2 73 155 AFK41760.1 unknown [Lotus japonicus] diamond 249 156 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
27168831 27168831 PRJNA306153_S_NODE_902_length_251_cov_3.536036_g889_i0 PRJNA306153 902 251 3.536036 8.87545036 Pedinophyceae sp. YPF-7 765719 Plants Plants 131 9.18e-37   NR CAG9462620.1 765719 g889 i0 72.3 18.8486055776892 83 23 99.2 0 249 1 10 92 CAG9462620.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 4731 131 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
27281593 27281593 PRJNA306153_S_NODE_1403_length_204_cov_5.017143_g1390_i0 PRJNA306153 1403 204 5.017143 10.23497172 Chlorellaceae 35461 Plants Plants 73.6 1.22e-13   NR PRW39386.1 3076 g1390 i0 57.4 6.11764705882353 61 25 88.2 1 204 25 198 258 PRW39386.1 40S ribosomal S3a-2 isoform B [Chlorella sorokiniana] diamond 1248 74.3 0.990578734858681 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
27548133 27548133 PRJNA306153_S_NODE_144_length_521_cov_4.400407_g134_i0 PRJNA306153 144 521 4.400407 22.92612047 Datura stramonium 4076 Plants Plants 164 1.3799999999999998e-47   NR MCE2055700.1 4076 g134 i0 54.2 6.6679462571977 168 76 96.7 1 15 518 40 206 MCE2055700.1 60S ribosomal protein L6 [Datura stramonium] diamond 3474 164 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Datura Datura stramonium
29410944 29410944 PRJNA306153_S_NODE_1629_length_192_cov_5.576687_g1616_i0 PRJNA306153 1629 192 5.576687 10.70723904 Canna indica 4628 Plants Plants 58.2 1.85e-8   NR WOL19609.1 4628 g1616 i0 68.9 2.8125 45 14 70.3 0 192 58 125 169 WOL19609.1 60S ribosomal protein L15 [Canna indica] diamond 540 58.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Cannaceae Canna Canna indica
30422183 30422183 PRJNA306153_S_NODE_1193_length_220_cov_3.570681_g1180_i0 PRJNA306153 1193 220 3.570681 7.8554982 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 103 6.22e-25   NR KAF6257032.1 2650976 g1180 i0 70.8 11.6727272727273 72 19 95.5 1 216 7 63 134 KAF6257032.1 component of cytosolic 80S ribosome and 40S small subunit [Scenedesmus sp. NREL 46B-D3] diamond 2568 103 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
31766899 31766899 PRJNA306153_S_NODE_1477_length_200_cov_3.678363_g1464_i0 PRJNA306153 1477 200 3.678363 7.356726 Eukaryota 2759 Plants Plants 86.7 2.28e-19   NR RZS01643.1 4639 g1464 i0 65.2 42.57 66 23 99 0 199 2 35 100 RZS01643.1 hypothetical protein BHM03_00031530 [Ensete ventricosum] diamond 8514 86.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Ensete Ensete ventricosum
32115107 32115107 PRJNA306153_S_NODE_2458_length_159_cov_1.346154_g2445_i0 PRJNA306153 2458 159 1.346154 2.14038486 Closterium 34145 Plants Plants 77.8 5.33e-15   NR CAI5519321.1 2996811 g2445 i0 73.6 5 53 14 100 0 159 1 989 1041 CAI5519321.1 unnamed protein product [Closterium sp. Naga37s-1] diamond 795 77.8 1 Eukaryota   Viridiplantae Streptophyta Zygnematophyceae Desmidiales Closteriaceae Closterium Closterium sp. Naga37s-1
32715436 32715436 PRJNA306153_S_NODE_1040_length_234_cov_4.312195_g1027_i0 PRJNA306153 1040 234 4.312195 10.0905363 Poaceae 4479 Plants Plants 98.6 4.29e-24   NR XP_062192623.1 29695 g1027 i0 70.6 4.38461538461539 68 20 87.2 0 2 205 76 143 XP_062192623.1 large ribosomal subunit protein uL24z-like [Phragmites australis] diamond 1026 99.4 0.991951710261569 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phragmites Phragmites australis
32886657 32886657 PRJNA306153_S_NODE_780_length_271_cov_6.111570_g767_i0 PRJNA306153 780 271 6.11157 16.5623547 Sphagnum jensenii 128206 Plants Plants 50.4 9.65e-5   NR CAK9253046.1 128206 g767 i0 42.6 0.597785977859779 54 30 59.8 1 262 101 314 366 CAK9253046.1 unnamed protein product [Sphagnum jensenii] diamond 162 50.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum jensenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;