contig_metadata
4 rows where analysis = "diamond", bioproject = "PRJNA306153" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20777885 | 20777885 | PRJNA306153_S_NODE_137_length_532_cov_6.689861_g127_i0 | PRJNA306153 | 137 | 532 | 6.689861 | 35.59006052 | Flavobacteriia bacterium | 2044941 | Bacteria | Bacteria | 210 | 3.0500000000000005e-64 | NR | NBO60432.1 | 2044941 | g127 | i0 | 63.9 | 1.90601503759399 | 169 | 57 | 94.7 | 3 | 531 | 28 | 154 | 319 | NBO60432.1 hypothetical protein [Flavobacteriia bacterium] | diamond | 1014 | 210 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriia bacterium | ||||
| 26884559 | 26884559 | PRJNA306153_S_NODE_141_length_524_cov_12.321212_g131_i0 | PRJNA306153 | 141 | 524 | 12.321212 | 64.56315088 | Phocaeicola vulgatus | 821 | Bacteria | Bacteria | 125 | 1.19e-33 | NR | WP_050229787.1 | 821 | g131 | i0 | 95.2 | 0.721374045801527 | 126 | 6 | 72.1 | 0 | 97 | 474 | 1 | 126 | WP_050229787.1 hypothetical protein [Phocaeicola vulgatus] | diamond | 378 | 125 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Phocaeicola | Phocaeicola vulgatus | |
| 27168830 | 27168830 | PRJNA306153_S_NODE_1962_length_177_cov_4.000000_g1949_i0 | PRJNA306153 | 1962 | 177 | 4 | 7.08 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 41.2 | 0.0488 | NR | HET7425640.1 | 2448054 | g1949 | i0 | 56.3 | 0.542372881355932 | 32 | 12 | 54.2 | 1 | 70 | 165 | 166 | 195 | HET7425640.1 hemolysin III family protein [Gemmatimonadales bacterium] | diamond | 96 | 41.2 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 29997189 | 29997189 | PRJNA306153_S_NODE_1671_length_190_cov_2.223602_g1658_i0 | PRJNA306153 | 1671 | 190 | 2.223602 | 4.2248438 | root | 1 | Root_unresolved | Root_unresolved | 42.4 | 0.0259 | NR | MCL2207105.1 | 2604144 | g1658 | i0 | 33.3 | 1.64210526315789 | 60 | 40 | 94.7 | 0 | 10 | 189 | 288 | 347 | MCL2207105.1 methyl-accepting chemotaxis protein [Candidatus Fibrimonadales bacterium] | diamond | 312 | 42.7 | 0.992974238875878 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Candidatus Fibrimonadales | Candidatus Fibrimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;