RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA299585" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA299585 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29270577 29270577 PRJNA299585_S_NODE_3609_length_464_cov_5.455172_g3384_i0 PRJNA299585 3609 464 5.455172 25.31199808 Chlamydia 810 Bacteria Bacteria 88.6 4.68e-19   NR EPJ29527.1 1112251 g3384 i0 42.9 2.35991379310345 119 68 76.9 0 386 30 9 127 EPJ29527.1 cytochrome c oxidase subunit 3, partial [Chlamydia psittaci 99DC5] diamond 1095 88.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31433013 31433013 PRJNA299585_S_NODE_10116_length_209_cov_7.222222_g9886_i0 PRJNA299585 10116 209 7.222222 15.09444398 Phycisphaerae bacterium 2026778 Bacteria Bacteria 42.7 0.0237   NR HUO07241.1 2026778 g9886 i0 51.3 0.559808612440191 39 17 56 2 149 33 299 335 HUO07241.1 radical SAM family heme chaperone HemW [Phycisphaerae bacterium] diamond 117 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;