RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA299585" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA299585 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2925863 2925863 PRJNA299585_S_NODE_4163_length_416_cov_4.524548_g3933_i0 PRJNA299585 4163 416 4.524548 18.82211968 Pseudomonadati 3379134 Bacteria Bacteria 255 2.74e-85   NR WP_214462570.1 357276 g3933 i0 99.3 2.98557692307692 138 1 99.5 0 416 3 3 140 WP_214462570.1 HRDC domain-containing protein, partial [Phocaeicola dorei] diamond 1242 255 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei
27660646 27660646 PRJNA299585_S_NODE_13624_length_167_cov_8.318841_g13394_i0 PRJNA299585 13624 167 8.318841 13.89246447 Pseudomonadati 3379134 Bacteria Bacteria 97.8 6.26e-25   NR WP_342855241.1 238 g13394 i0 100 1.97604790419162 55 0 98.8 0 167 3 4 58 WP_342855241.1 YDG domain-containing protein, partial [Elizabethkingia meningoseptica] diamond 330 97.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia meningoseptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;