RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA293022" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA293022 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28684996 28684996 PRJNA293022_P_NODE_77787_length_163_cov_0.912281_g77050_i0 PRJNA293022 77787 163 0.912281 1.48701803 Brevinema andersonii 34097 Bacteria Bacteria 82.8 4.53e-17   NR WP_092318314.1 34097 g77050 i0 67.9 0.975460122699387 53 17 97.5 0 160 2 149 201 WP_092318314.1 UDP-glucose 4-epimerase GalE [Brevinema andersonii] diamond 159 82.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales Brevinemataceae Brevinema Brevinema andersonii
29221751 29221751 PRJNA293022_P_NODE_70509_length_167_cov_0.881356_g69772_i0 PRJNA293022 70509 167 0.881356 1.47186452 Treponema sp. Marseille-Q413 166 Bacteria Bacteria 111 2.2399999999999993e-28   NR WP_187385369.1 2766702 g69772 i0 92.7 0.988023952095808 55 4 98.8 0 165 1 3 57 WP_187385369.1 BRO family protein [Treponema sp. Marseille-Q4130] diamond 165 111 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. Marseille-Q4130

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;