RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA293022" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA293022 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18911122 18911122 PRJNA293022_P_NODE_34295_length_239_cov_1.084211_g33558_i0 PRJNA293022 34295 239 1.084211 2.59126429 Mycoplasma 2093 Bacteria Bacteria 137 8.78e-36   NR WP_015726045.1 29501 g33558 i0 89.9 9.85355648535565 79 8 99.2 0 237 1 315 393 WP_015726045.1 molecular chaperone DnaK [Mycoplasma haemofelis] diamond 2355 137 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma haemofelis
28842532 28842532 PRJNA293022_P_NODE_57968_length_183_cov_1.007463_g57231_i0 PRJNA293022 57968 183 1.007463 1.84365729 Candidatus Mycoplasma haematohominis 1494318 Bacteria Bacteria 68.9 8.54e-12   NR WP_216082890.1 1494318 g57231 i0 57.6 1.91803278688525 59 24 95.1 1 178 5 160 218 WP_216082890.1 HD domain-containing protein [Candidatus Mycoplasma haematohominis] diamond 351 68.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematohominis
30295795 30295795 PRJNA293022_P_NODE_43032_length_213_cov_0.823171_g42295_i0 PRJNA293022 43032 213 0.823171 1.75335423 Candidatus Mycoplasma haematohominis 1494318 Bacteria Bacteria 97.8 1.2799999999999999e-23   NR WP_216083123.1 1494318 g42295 i0 65.7 1.95774647887324 70 24 98.6 0 211 2 33 102 WP_216083123.1 50S ribosomal protein L6 [Candidatus Mycoplasma haematohominis] diamond 417 97.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematohominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;