RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA293022" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA293022 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28134219 28134219 PRJNA293022_P_NODE_44225_length_210_cov_1.074534_g43488_i0 PRJNA293022 44225 210 1.074534 2.2565214 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 1.6e-26   NR XP_004332832.1 1257118 g43488 i0 75.4 2.95714285714286 69 17 98.6 0 207 1 373 441 XP_004332832.1 Prokumamolisin, putative [Acanthamoeba castellanii str. Neff] diamond 621 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28432253 28432253 PRJNA293022_P_NODE_37826_length_227_cov_1.713483_g37089_i0 PRJNA293022 37826 227 1.713483 3.88960641 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 2.55e-13   NR XP_004341732.1 1257118 g37089 i0 87.8 1.08370044052863 41 5 54.2 0 3 125 269 309 XP_004341732.1 uncharacterized protein ACA1_198710 [Acanthamoeba castellanii str. Neff] diamond 246 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28463932 28463932 PRJNA293022_P_NODE_72066_length_166_cov_0.888889_g71329_i0 PRJNA293022 72066 166 0.888889 1.47555574 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.8 1.05e-20   NR XP_004358072.1 1257118 g71329 i0 74.1 3.90361445783133 54 14 97.6 0 164 3 25 78 XP_004358072.1 ribosomal protein L31e, putative [Acanthamoeba castellanii str. Neff] diamond 648 87.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29032364 29032364 PRJNA293022_P_NODE_75908_length_164_cov_0.904348_g75171_i0 PRJNA293022 75908 164 0.904348 1.48313072 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 99 6.819999999999999e-23   NR AEL74961.1 180228 g75171 i0 86.8 1.86585365853659 53 7 97 0 161 3 196 248 AEL74961.1 alpha-tubulin, partial [Paramoeba pemaquidensis] diamond 306 99 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
30218115 30218115 PRJNA293022_P_NODE_30772_length_253_cov_1.147059_g30035_i0 PRJNA293022 30772 253 1.147059 2.90205927 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 2.29e-33   NR XP_004333102.1 1257118 g30035 i0 71.4 1.99209486166008 84 24 99.6 0 253 2 48 131 XP_004333102.1 ribosomal protein L32, putative [Acanthamoeba castellanii str. Neff] diamond 504 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;