RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA293022" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA293022 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29442338 29442338 PRJNA293022_P_NODE_79630_length_162_cov_0.920354_g78893_i0 PRJNA293022 79630 162 0.920354 1.49097348 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 41.2 0.0407   NR HEX6202390.1 2651171 g78893 i0 47.2 0.666666666666667 36 19 66.7 0 136 29 137 172 HEX6202390.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 108 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29789746 29789746 PRJNA293022_P_NODE_50951_length_195_cov_1.801370_g50214_i0 PRJNA293022 50951 195 1.80137 3.5126715 Candidatus Solibacter sp. 2068625 Bacteria Bacteria 41.2 0.0308   NR MEO8369265.1 2068625 g50214 i0 56 0.384615384615385 25 11 38.5 0 172 98 8 32 MEO8369265.1 hypothetical protein [Candidatus Solibacter sp.] diamond 75 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter sp.
31749211 31749211 PRJNA293022_P_NODE_78397_length_162_cov_1.831858_g77660_i0 PRJNA293022 78397 162 1.831858 2.96760996 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 96.7 1.5699999999999994e-23   NR HYZ82997.1 2212468 g77660 i0 78.4 0.944444444444444 51 11 94.4 0 8 160 1 51 HYZ82997.1 peroxiredoxin [Bryobacteraceae bacterium] diamond 153 96.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32572158 32572158 PRJNA293022_P_NODE_56079_length_186_cov_1.394161_g55342_i0 PRJNA293022 56079 186 1.394161 2.59313946 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 40.8 0.0293   NR HYN10246.1 2910147 g55342 i0 43.9 0.661290322580645 41 23 66.1 0 4 126 29 69 HYN10246.1 PadR family transcriptional regulator [Vicinamibacterales bacterium] diamond 123 40.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;