RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA293022" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA293022 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28116394 28116394 PRJNA293022_P_NODE_77185_length_163_cov_0.912281_g76448_i0 PRJNA293022 77185 163 0.912281 1.48701803 Deinococcus antarcticus 1298767 Bacteria Bacteria 114 8.45e-29   NR WP_380077852.1 1298767 g76448 i0 100 0.975460122699387 53 0 97.5 0 160 2 185 237 WP_380077852.1 LptA/OstA family protein [Deinococcus antarcticus] diamond 159 114 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
29600194 29600194 PRJNA293022_P_NODE_43770_length_211_cov_1.271605_g43033_i0 PRJNA293022 43770 211 1.271605 2.68308655 Synergistaceae bacterium 2053624 Bacteria Bacteria 50.4 1.44e-5   NR MDI3533296.1 2053624 g43033 i0 50.8 0.838862559241706 59 28 82.5 1 4 177 49 107 MDI3533296.1 hypothetical protein [Synergistaceae bacterium] diamond 177 50.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29631733 29631733 PRJNA293022_P_NODE_78970_length_162_cov_0.920354_g78233_i0 PRJNA293022 78970 162 0.920354 1.49097348 Deinococcus xinjiangensis 457454 Bacteria Bacteria 106 3.39e-27   NR WP_353541391.1 457454 g78233 i0 100 0.981481481481482 53 0 98.1 0 159 1 34 86 WP_353541391.1 hypothetical protein [Deinococcus xinjiangensis] diamond 159 106 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
30548095 30548095 PRJNA293022_P_NODE_77073_length_163_cov_0.912281_g76336_i0 PRJNA293022 77073 163 0.912281 1.48701803 Deinococcus 1298 Bacteria Bacteria 60.8 3.01e-10   NR WP_013615632.1 1298 g76336 i0 63.8 1.73006134969325 47 17 86.5 0 161 21 59 105 WP_013615632.1 MULTISPECIES: hypothetical protein [Deinococcus] diamond 282 60.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;