contig_metadata
5 rows where analysis = "diamond", bioproject = "PRJNA290839" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18224559 | 18224559 | PRJNA290839_P_NODE_295_length_492_cov_1.288783_g274_i0 | PRJNA290839 | 295 | 492 | 1.288783 | 6.34081236 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 167 | 1.19e-49 | NR | XP_067742027.1 | 164328 | g274 | i0 | 56.1 | 11.3231707317073 | 157 | 66 | 94.5 | 3 | 5 | 469 | 24 | 179 | XP_067742027.1 Ubiquitin-40S ribosomal protein S27a [Phytophthora ramorum] | diamond | 5571 | 167 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora ramorum | ||
| 28779377 | 28779377 | PRJNA290839_P_NODE_1087_length_251_cov_1.556180_g1066_i0 | PRJNA290839 | 1087 | 251 | 1.55618 | 3.9060118 | Albugo laibachii Nc14 | 890382 | SAR_Eukaryotes | SAR_Eukaryotes | 99 | 3.1e-23 | NR | CCA18322.1 | 890382 | g1066 | i0 | 64.1 | 0.932270916334661 | 78 | 26 | 93.2 | 1 | 251 | 18 | 150 | 225 | CCA18322.1 40S ribosomal protein S33 putative [Albugo laibachii Nc14] | diamond | 234 | 99 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Albuginales | Albuginaceae | Albugo | Albugo laibachii | ||
| 30359048 | 30359048 | PRJNA290839_P_NODE_892_length_271_cov_1.565657_g871_i0 | PRJNA290839 | 892 | 271 | 1.565657 | 4.24293047 | Aphanomyces astaci | 112090 | SAR_Eukaryotes | SAR_Eukaryotes | 155 | 1.33e-45 | NR | RHY63180.1 | 112090 | g871 | i0 | 82.2 | 5.87822878228782 | 90 | 14 | 99.6 | 1 | 271 | 2 | 111 | 198 | RHY63180.1 hypothetical protein DYB34_003832 [Aphanomyces astaci] | diamond | 1593 | 155 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces astaci | ||
| 31306444 | 31306444 | PRJNA290839_P_NODE_1015_length_253_cov_0.866667_g994_i0 | PRJNA290839 | 1015 | 253 | 0.866667 | 2.19266751 | Peronosclerospora sorghi | 230839 | SAR_Eukaryotes | SAR_Eukaryotes | 87.4 | 5.03e-18 | NR | KAI9906506.1 | 230839 | g994 | i0 | 55 | 3.79446640316206 | 80 | 36 | 94.9 | 0 | 1 | 240 | 66 | 145 | KAI9906506.1 hypothetical protein PsorP6_016583 [Peronosclerospora sorghi] | diamond | 960 | 87.4 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Peronosclerospora | Peronosclerospora sorghi | ||
| 31798349 | 31798349 | PRJNA290839_P_NODE_717_length_303_cov_1.013043_g696_i0 | PRJNA290839 | 717 | 303 | 1.013043 | 3.06952029 | Oomycota | 4762 | SAR_Eukaryotes | SAR_Eukaryotes | 157 | 2.7899999999999998e-46 | NR | XP_024577953.1 | 4781 | g696 | i0 | 78.2 | 9 | 101 | 22 | 100 | 0 | 1 | 303 | 27 | 127 | XP_024577953.1 ribosomal protein s4 [Plasmopara halstedii] | diamond | 2727 | 158 | 0.993670886075949 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Plasmopara | Plasmopara halstedii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;