RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA290839" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27010806 27010806 PRJNA290839_P_NODE_1102_length_251_cov_0.876404_g1081_i0 PRJNA290839 1102 251 0.876404 2.19977404 Caenorhabditis remanei 31234 Nematoda Nematoda 105 3.76e-25   NR EFP00214.1 31234 g1081 i0 92.6 0.645418326693227 54 4 64.5 0 89 250 1 54 EFP00214.1 CRE-SRJ-7 protein [Caenorhabditis remanei] diamond 162 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
27516559 27516559 PRJNA290839_P_NODE_1283_length_248_cov_0.885714_g1262_i0 PRJNA290839 1283 248 0.885714 2.19657072 Strongyloides ratti 34506 Nematoda Nematoda 44.3 0.0115   NR XP_024499784.1 34506 g1262 i0 32.9 1.33064516129032 73 46 84.7 1 237 28 838 910 XP_024499784.1 Insulin-like growth factor binding protein,N-terminal domain-containing protein [Strongyloides ratti] diamond 330 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
27611396 27611396 PRJNA290839_P_NODE_604_length_330_cov_1.042802_g583_i0 PRJNA290839 604 330 1.042802 3.4412466 Pristionchus mayeri 1317129 Nematoda Nematoda 86.7 2.38e-17   NR GMR59452.1 1317129 g583 i0 38.5 0.990909090909091 109 67 99.1 0 2 328 34 142 GMR59452.1 hypothetical protein PMAYCL1PPCAC_29647, partial [Pristionchus mayeri] diamond 327 86.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
29789735 29789735 PRJNA290839_P_NODE_1511_length_244_cov_0.912281_g1490_i0 PRJNA290839 1511 244 0.912281 2.22596564 Caenorhabditis nigoni 1611254 Nematoda Nematoda 95.9 7.56e-21   NR PIC14317.1 1611254 g1490 i0 96.2 0.639344262295082 52 2 63.9 0 244 89 49 100 PIC14317.1 hypothetical protein B9Z55_027263 [Caenorhabditis nigoni] diamond 156 95.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
30516504 30516504 PRJNA290839_P_NODE_1013_length_253_cov_1.200000_g992_i0 PRJNA290839 1013 253 1.2 3.036 Caenorhabditis nigoni 1611254 Nematoda Nematoda 65.9 3.17e-10   NR PIC12202.1 1611254 g992 i0 88.9 0.853754940711462 36 4 42.7 0 145 252 1147 1182 PIC12202.1 hypothetical protein B9Z55_028556 [Caenorhabditis nigoni] diamond 216 65.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
30944998 30944998 PRJNA290839_P_NODE_354_length_449_cov_1.015957_g333_i0 PRJNA290839 354 449 1.015957 4.56164693 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 166 9.43e-45   NR VDN50986.1 318479 g333 i0 51 6.80178173719376 147 71 98.2 1 448 8 557 702 VDN50986.1 unnamed protein product [Dracunculus medinensis] diamond 3054 167 0.994011976047904 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
30976618 30976618 PRJNA290839_P_NODE_1594_length_243_cov_0.894118_g1573_i0 PRJNA290839 1594 243 0.894118 2.17270674 Opisthokonta 33154 Nematoda Nematoda 84 1.12e-16   NR KAI6192179.1 293665 g1573 i0 51.3 5.11111111111111 78 35 92.6 1 17 241 136 213 KAI6192179.1 Endo-1,3(4)-beta-glucanase [Aphelenchoides bicaudatus] diamond 1242 84.7 0.991735537190083 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
31956647 31956647 PRJNA290839_P_NODE_1457_length_245_cov_0.906977_g1436_i0 PRJNA290839 1457 245 0.906977 2.22209365 Rhabditida 6236 Nematoda Nematoda 82.8 2.98e-16   NR MCP9259181.1 6287 g1436 i0 53.1 5.73061224489796 81 36 96.7 1 6 242 372 452 MCP9259181.1 hypothetical protein [Dirofilaria immitis] diamond 1404 83.6 0.990430622009569 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;