RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA290839" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27091848 27091848 PRJNA290839_P_NODE_1422_length_246_cov_0.890173_g1401_i0 PRJNA290839 1422 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 63.2 2.46e-9   NR KAJ9448377.1 91374 g1401 i0 41.9 4.3780487804878 74 42 90.2 1 244 23 234 306 KAJ9448377.1 hypothetical protein DIPPA_55829 [Diplonema papillatum] diamond 1077 63.5 0.995275590551181 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28148172 28148172 PRJNA290839_P_NODE_1085_length_251_cov_1.634831_g1064_i0 PRJNA290839 1085 251 1.634831 4.10342581 Bodo saltans 75058 Euglenozoa other_Eukaryota 79 7.27e-15   NR CUG91655.1 75058 g1064 i0 48.8 1.91235059760956 80 37 90.8 1 18 245 154 233 CUG91655.1 Hypothetical protein, putative [Bodo saltans] diamond 480 79 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28400638 28400638 PRJNA290839_P_NODE_1446_length_245_cov_0.906977_g1425_i0 PRJNA290839 1446 245 0.906977 2.22209365 Trypanosoma brucei gambiense DAL972 679716 Euglenozoa other_Eukaryota 135 1.32e-37   NR XP_011774275.1 679716 g1425 i0 80.2 4.95918367346939 81 16 99.2 0 244 2 105 185 XP_011774275.1 S-adenosylmethionine synthetase, putative,(fragment), partial [Trypanosoma brucei gambiense DAL972] diamond 1215 135 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;