RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA290839" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27200387 27200387 PRJNA290839_P_NODE_1262_length_248_cov_0.891429_g1241_i0 PRJNA290839 1262 248 0.891429 2.21074392 Microbacteriaceae bacterium 1873462 Bacteria Bacteria 42.7 0.0184   NR MBX9717869.1 1873462 g1241 i0 59.4 0.387096774193548 32 13 38.7 0 6 101 62 93 MBX9717869.1 hypothetical protein [Microbacteriaceae bacterium] diamond 96 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   Microbacteriaceae bacterium
27281574 27281574 PRJNA290839_P_NODE_1603_length_242_cov_1.775148_g1582_i0 PRJNA290839 1603 242 1.775148 4.29585816 Actinomycetospora 402649 Bacteria Bacteria 143 8.92e-38   NR WP_274200886.1 3019891 g1582 i0 89.7 1.94628099173554 78 8 96.7 0 8 241 99 176 WP_274200886.1 acyltransferase family protein [Actinomycetospora lemnae] diamond 471 143 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora lemnae
29473858 29473858 PRJNA290839_P_NODE_1510_length_244_cov_0.912281_g1489_i0 PRJNA290839 1510 244 0.912281 2.22596564 Leifsonia sp. TF 1870902 Bacteria Bacteria 71.6 7.14e-14   NR WP_208039974.1 2815212 g1489 i0 100 0.454918032786885 37 0 45.5 0 134 244 1 37 WP_208039974.1 hypothetical protein [Leifsonia sp. TF02-11] diamond 111 71.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. TF02-11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;