RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA290839" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA290839 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29316267 29316267 PRJNA290839_P_NODE_469_length_377_cov_1.259868_g448_i0 PRJNA290839 469 377 1.259868 4.74970236 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 46.6 0.00688   NR MCK4540377.1 2762014 g448 i0 47.6 0.3342175066313 42 22 33.4 0 20 145 308 349 MCK4540377.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 126 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31654253 31654253 PRJNA290839_P_NODE_1217_length_249_cov_0.886364_g1196_i0 PRJNA290839 1217 249 0.886364 2.20704636 Candidatus Firestonebacteria bacterium GWA2_43_8 1817858 Bacteria Bacteria 43.1 0.0293   NR OGF49626.1 1817858 g1196 i0 29.5 1.14457831325301 95 45 88 2 25 243 127 221 OGF49626.1 MAG: hypothetical protein A2044_04530 [Candidatus Firestonebacteria bacterium GWA2_43_8] diamond 285 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Firestoneibacteriota         Candidatus Firestonebacteria bacterium GWA2_43_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;