RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26915958 26915958 PRJNA289590_P_NODE_22622_length_185_cov_1.529412_g22398_i0 PRJNA289590 22622 185 1.529412 2.8294122 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 2.82e-12   NR RYD85970.1 2026800 g22398 i0 53.8 0.843243243243243 52 24 84.3 0 30 185 515 566 RYD85970.1 MAG: hypothetical protein EOP84_00610 [Verrucomicrobiaceae bacterium] diamond 156 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27358827 27358827 PRJNA289590_P_NODE_4183_length_499_cov_2.033333_g3964_i0 PRJNA289590 4183 499 2.033333 10.14633167 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 139 2.4899999999999996e-37   NR HEV2695716.1 2499141 g3964 i0 49.7 0.907815631262525 151 72 90.2 3 493 44 7 154 HEV2695716.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 453 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29902356 29902356 PRJNA289590_P_NODE_24871_length_174_cov_1.112000_g24647_i0 PRJNA289590 24871 174 1.112 1.93488 PVC group 1783257 Bacteria Bacteria 52 8.33e-6   NR MEI6675535.1 2026799 g24647 i0 50.9 5 53 26 91.4 0 1 159 2541 2593 MEI6675535.1 cadherin-like beta sandwich domain-containing protein [Verrucomicrobiota bacterium] diamond 870 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;