RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_phylum = "Uroviricota"

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tax_superkingdom 1

tax_phylum 1

  • Uroviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26775486 26775486 PRJNA289590_P_NODE_20301_length_197_cov_2.790541_g20077_i0 PRJNA289590 20301 197 2.790541 5.49736577 Viruses 10239 Viruses Viruses 47.8 2.3e-5   NR QLI49465.1 2743937 g20077 i0 56.5 1.34010152284264 46 20 70.1 0 1 138 13 58 QLI49465.1 hypothetical protein vBPaeMUSP18_64 [Pseudomonas phage vB_PaeM_USP_18] diamond 264 47.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Pseudomonas phage vB_PaeM_USP_18
26852925 26852925 PRJNA289590_P_NODE_6161_length_390_cov_1.454545_g5937_i0 PRJNA289590 6161 390 1.454545 5.6727255 Pseudoalteromonas phage pYD6-A 754052 Viruses Viruses 79.7 1.83e-14   NR YP_007674256.1 754052 g5937 i0 47.3 0.992307692307692 129 62 97.7 3 8 388 293 417 YP_007674256.1 hypothetical protein PYDG_00047 [Pseudoalteromonas phage pYD6-A] diamond 387 79.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Schitoviridae Matsuvirus Matsuvirus pYD6A
32603412 32603412 PRJNA289590_P_NODE_10820_length_280_cov_0.982684_g10596_i0 PRJNA289590 10820 280 0.982684 2.7515152 Nitrincola phage 1M3-16 1472912 Viruses Viruses 63.2 3.3e-9   NR YP_009037253.1 1472912 g10596 i0 42.6 0.728571428571429 68 39 72.9 0 75 278 244 311 YP_009037253.1 ATP-dependent DNA ligase [Nitrincola phage 1M3-16] diamond 204 63.2 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Nitrincola phage 1M3-16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;