RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA289590 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26775488 26775488 PRJNA289590_P_NODE_24461_length_176_cov_1.204724_g24237_i0 PRJNA289590 24461 176 1.204724 2.12031424 Eukaryota 2759 Plants Plants 80.9 5.3e-16   NR XP_011398664.1 3075 g24237 i0 64.3 3.81818181818182 56 20 95.5 0 169 2 270 325 XP_011398664.1 Dihydrolipoyl dehydrogenase 1, mitochondrial [Auxenochlorella protothecoides] diamond 672 80.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
29252868 29252868 PRJNA289590_P_NODE_31189_length_162_cov_0.920354_g30965_i0 PRJNA289590 31189 162 0.920354 1.49097348 Cymbomonas tetramitiformis 36881 Plants Plants 65.9 8.46e-11   NR KAK3253051.1 36881 g30965 i0 59.6 0.962962962962963 52 20 96.3 1 2 157 132 182 KAK3253051.1 hypothetical protein CYMTET_37680 [Cymbomonas tetramitiformis] diamond 156 65.9 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;