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contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 18 ✖

tax_kingdom 1

bioproject 1

  • PRJNA289590 · 18 ✖

analysis 1

  • diamond · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26599026 26599026 PRJNA289590_P_NODE_30041_length_164_cov_0.878261_g29817_i0 PRJNA289590 30041 164 0.878261 1.44034804 Pseudokineococcus marinus 351215 Bacteria Bacteria 92 4.67e-20   NR WP_171203999.1 351215 g29817 i0 81.5 0.98780487804878 54 10 98.8 0 163 2 339 392 WP_171203999.1 catalase [Pseudokineococcus marinus] diamond 162 92 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Pseudokineococcus Pseudokineococcus marinus
26965193 26965193 PRJNA289590_P_NODE_23262_length_182_cov_1.556391_g23038_i0 PRJNA289590 23262 182 1.556391 2.83263162 Actinomycetota 201174 Bacteria Bacteria 65.9 1.16e-10   NR MEA2314811.1 2586742 g23038 i0 59.7 3.04945054945055 62 23 98.9 2 3 182 504 565 MEA2314811.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 555 65.9 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
27028557 27028557 PRJNA289590_P_NODE_14542_length_237_cov_1.648936_g14318_i0 PRJNA289590 14542 237 1.648936 3.90797832 Actinomycetes 1760 Bacteria Bacteria 95.1 1.28e-20   NR WP_073893777.1 2071 g14318 i0 66.2 6.59493670886076 74 25 93.7 0 15 236 5597 5670 WP_073893777.1 MULTISPECIES: non-ribosomal peptide synthetase [Saccharothrix] diamond 1563 95.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix  
27453592 27453592 PRJNA289590_P_NODE_13243_length_250_cov_2.069652_g13019_i0 PRJNA289590 13243 250 2.069652 5.17413 Mycolicibacterium sp. 2320850 Bacteria Bacteria 119 6.45e-29   NR WP_372943725.1 2320850 g13019 i0 71.1 1.992 83 24 99.6 0 250 2 217 299 WP_372943725.1 phage tail tape measure protein [Mycolicibacterium sp.] diamond 498 119 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sp.
28179350 28179350 PRJNA289590_P_NODE_27566_length_167_cov_0.881356_g27342_i0 PRJNA289590 27566 167 0.881356 1.47186452 Actinomycetota bacterium 2900548 Bacteria Bacteria 44.7 0.00278   NR MDQ1601302.1 2900548 g27342 i0 42.6 1.68862275449102 47 26 82.6 1 24 161 165 211 MDQ1601302.1 hypothetical protein [Actinomycetota bacterium] diamond 282 44.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28228528 28228528 PRJNA289590_P_NODE_15126_length_232_cov_1.590164_g14902_i0 PRJNA289590 15126 232 1.590164 3.68918048 Bacteria 2 Bacteria Bacteria 114 1.14e-29   NR MES9394400.1 1747 g14902 i0 73.7 8.8448275862069 76 20 98.3 0 230 3 57 132 MES9394400.1 arginine--tRNA ligase [Cutibacterium acnes] diamond 2052 115 0.991304347826087 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28368956 28368956 PRJNA289590_P_NODE_29266_length_165_cov_0.896552_g29042_i0 PRJNA289590 29266 165 0.896552 1.4793108 Actinomycetes bacterium 1883427 Bacteria Bacteria 108 1.14e-25   NR MCG9477778.1 1883427 g29042 i0 98.1 0.963636363636364 53 1 96.4 0 6 164 579 631 MCG9477778.1 phosphoribosylformylglycinamidine synthase subunit PurL [Actinomycetes bacterium] diamond 159 108 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
28621759 28621759 PRJNA289590_P_NODE_24147_length_177_cov_2.437500_g23923_i0 PRJNA289590 24147 177 2.4375 4.314375 Catellatospora sp. NPDC 54104 Bacteria Bacteria 65.9 8.71e-11   NR WP_360541395.1 3155271 g23923 i0 66.7 0.813559322033898 48 16 81.4 0 30 173 85 132 WP_360541395.1 hypothetical protein [Catellatospora sp. NPDC049111] diamond 144 65.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Catellatospora Catellatospora sp. NPDC049111
28653250 28653250 PRJNA289590_P_NODE_1587_length_1019_cov_14.557732_g1404_i0 PRJNA289590 1587 1019 14.557732 148.34328908 Nonomuraea angiospora 46172 Bacteria Bacteria 45.4 0.0151   NR WP_319716170.1 46172 g1404 i0 52.3 0.129538763493621 44 21 13 0 767 636 9 52 WP_319716170.1 hypothetical protein, partial [Nonomuraea angiospora] diamond 132 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea angiospora
29252864 29252864 PRJNA289590_P_NODE_27369_length_167_cov_0.881356_g27145_i0 PRJNA289590 27369 167 0.881356 1.47186452 Geodermatophilaceae bacterium 1882271 Bacteria Bacteria 41.2 0.0475   NR MBA3419366.1 1882271 g27145 i0 44.4 0.808383233532934 45 25 80.8 0 30 164 586 630 MBA3419366.1 hypothetical protein [Geodermatophilaceae bacterium] diamond 135 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae   Geodermatophilaceae bacterium
30390561 30390561 PRJNA289590_P_NODE_31353_length_162_cov_0.920354_g31129_i0 PRJNA289590 31353 162 0.920354 1.49097348 Nocardioides sp. CN2-186 3156607 Bacteria Bacteria 89.7 3.17e-19   NR WP_348870305.1 3156607 g31129 i0 86.8 0.981481481481482 53 7 98.1 0 161 3 100 152 WP_348870305.1 class I adenylate-forming enzyme family protein [Nocardioides sp. CN2-186] diamond 159 89.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides tweenelious
30895804 30895804 PRJNA289590_P_NODE_19054_length_205_cov_1.000000_g18830_i0 PRJNA289590 19054 205 1 2.05 Actinomycetota bacterium 2900548 Bacteria Bacteria 42 0.0427   NR TML42851.1 2900548 g18830 i0 56.4 0.570731707317073 39 11 55.6 2 89 202 30 63 TML42851.1 MAG: ABC transporter ATP-binding protein [Actinomycetota bacterium] diamond 117 42 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30990580 30990580 PRJNA289590_P_NODE_1594_length_1015_cov_14.966874_g1411_i0 PRJNA289590 1594 1015 14.966874 151.9137711 Nonomuraea angiospora 46172 Bacteria Bacteria 45.4 0.015   NR WP_319716170.1 46172 g1411 i0 52.3 0.130049261083744 44 21 13 0 763 632 9 52 WP_319716170.1 hypothetical protein, partial [Nonomuraea angiospora] diamond 132 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea angiospora
31022061 31022061 PRJNA289590_P_NODE_19715_length_201_cov_1.269737_g19491_i0 PRJNA289590 19715 201 1.269737 2.55217137 Streptomyces pactum 68249 Bacteria Bacteria 62.4 1.23e-9   NR WP_197987272.1 68249 g19491 i0 54.5 0.82089552238806 55 25 82.1 0 200 36 183 237 WP_197987272.1 flavin reductase family protein [Streptomyces pactum] diamond 165 62.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pactum
32319119 32319119 PRJNA289590_P_NODE_10199_length_289_cov_2.062500_g9975_i0 PRJNA289590 10199 289 2.0625 5.960625 Streptomyces sp. NPDC 1931 Bacteria Bacteria 84 2.23e-16   NR WP_400070639.1 3365701 g9975 i0 48.4 0.986159169550173 95 48 97.6 1 283 2 1589 1683 WP_400070639.1 amino acid adenylation domain-containing protein [Streptomyces sp. NPDC053427] diamond 285 84 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC053427
32445614 32445614 PRJNA289590_P_NODE_26179_length_169_cov_0.866667_g25955_i0 PRJNA289590 26179 169 0.866667 1.46466723 Mycolicibacterium arenosum 2952157 Bacteria Bacteria 75.5 5.18e-16   NR WP_255062745.1 2952157 g25955 i0 81.4 0.763313609467456 43 8 76.3 0 130 2 20 62 WP_255062745.1 hypothetical protein [Mycolicibacterium arenosum] diamond 129 75.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium arenosum
32697706 32697706 PRJNA289590_P_NODE_11580_length_270_cov_0.941176_g11356_i0 PRJNA289590 11580 270 0.941176 2.5411752 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.1 0.0352   NR MDP9461866.1 2900548 g11356 i0 35.8 0.744444444444444 67 43 74.4 0 21 221 78 144 MDP9461866.1 DUF4192 domain-containing protein [Actinomycetota bacterium] diamond 201 43.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32841248 32841248 PRJNA289590_P_NODE_12540_length_258_cov_1.937799_g12316_i0 PRJNA289590 12540 258 1.937799 4.99952142 Bacteria 2 Bacteria Bacteria 77 6.52e-16   NR WP_027004908.1 191495 g12316 i0 55.4 3.59302325581395 74 33 86 0 32 253 44 117 WP_027004908.1 holo-ACP synthase [Conexibacter woesei] diamond 927 77 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;