RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA289590 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1647294 1647294 PRJNA289590_P_NODE_22_length_11072_cov_17.623787_g20_i0 PRJNA289590 22 11072 17.623787 1951.30569664 Phycisphaerales bacterium 2052180 Bacteria Bacteria 878 1.28e-273   NR MCA9280974.1 2052180 g20 i0 38.2 1.15019869942197 1418 822 37.6 19 5960 1794 1 1393 MCA9280974.1 AAA family ATPase [Phycisphaerales bacterium] diamond 12735 878 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
26915958 26915958 PRJNA289590_P_NODE_22622_length_185_cov_1.529412_g22398_i0 PRJNA289590 22622 185 1.529412 2.8294122 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 2.82e-12   NR RYD85970.1 2026800 g22398 i0 53.8 0.843243243243243 52 24 84.3 0 30 185 515 566 RYD85970.1 MAG: hypothetical protein EOP84_00610 [Verrucomicrobiaceae bacterium] diamond 156 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27358827 27358827 PRJNA289590_P_NODE_4183_length_499_cov_2.033333_g3964_i0 PRJNA289590 4183 499 2.033333 10.14633167 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 139 2.4899999999999996e-37   NR HEV2695716.1 2499141 g3964 i0 49.7 0.907815631262525 151 72 90.2 3 493 44 7 154 HEV2695716.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 453 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29902356 29902356 PRJNA289590_P_NODE_24871_length_174_cov_1.112000_g24647_i0 PRJNA289590 24871 174 1.112 1.93488 PVC group 1783257 Bacteria Bacteria 52 8.33e-6   NR MEI6675535.1 2026799 g24647 i0 50.9 5 53 26 91.4 0 1 159 2541 2593 MEI6675535.1 cadherin-like beta sandwich domain-containing protein [Verrucomicrobiota bacterium] diamond 870 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32129141 32129141 PRJNA289590_P_NODE_14638_length_236_cov_1.946524_g14414_i0 PRJNA289590 14638 236 1.946524 4.59379664 Gemmataceae bacterium 2052164 Bacteria Bacteria 50.8 3.83e-5   NR MCI0681538.1 2052164 g14414 i0 42.7 0.953389830508475 75 42 94.1 1 14 235 122 196 MCI0681538.1 hypothetical protein [Gemmataceae bacterium] diamond 225 50.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32431475 32431475 PRJNA289590_P_NODE_27019_length_168_cov_0.873950_g26795_i0 PRJNA289590 27019 168 0.87395 1.468236 Bacteria 2 Bacteria Bacteria 70.9 9.11e-14   NR MBL8820106.1 37635 g26795 i0 62.7 11.9464285714286 51 19 91.1 0 3 155 83 133 MBL8820106.1 GNAT family N-acetyltransferase [Planctomyces sp.] diamond 2007 71.2 0.995786516853933 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;