RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA289590" and tax_clade = "Opisthokonta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

tax_clade 1

  • Opisthokonta · 16 ✖

bioproject 1

  • PRJNA289590 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11850903 11850903 PRJNA289590_P_NODE_10050_length_292_cov_1.497942_g9826_i0 PRJNA289590 10050 292 1.497942 4.37399064 Fungi 4751 Fungi Fungi 146 2.66e-41   NR KAH9993630.1 517384 g9826 i0 73 7.97260273972603 89 24 91.4 0 290 24 23 111 KAH9993630.1 guanine nucleotide binding protein beta subunit [Russula vinacea] diamond 2328 147 0.993197278911565 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Russulales Russulaceae Russula Russula vinacea
26807018 26807018 PRJNA289590_P_NODE_14721_length_235_cov_3.053763_g14497_i0 PRJNA289590 14721 235 3.053763 7.17634305 Mammalia 40674 Chordata Chordata 98.6 4.279999999999999e-23   NR XP_058990340.1 9666 g14497 i0 63.6 34.3914893617021 77 26 95.7 1 10 234 119 195 XP_058990340.1 large ribosomal subunit protein eL22-like [Mustela lutreola] diamond 8082 99.4 0.991951710261569 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela lutreola
26821172 26821172 PRJNA289590_P_NODE_15821_length_227_cov_1.168539_g15597_i0 PRJNA289590 15821 227 1.168539 2.65258353 Tigriopus californicus 6832 Arthropoda Arthropoda 90.5 3.4e-19   NR XP_059090583.1 6832 g15597 i0 67.1 4.16299559471366 70 21 92.5 1 16 225 1 68 XP_059090583.1 eukaryotic peptide chain release factor subunit 1 [Tigriopus californicus] diamond 945 90.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Hexanauplia Harpacticoida Harpacticidae Tigriopus Tigriopus californicus
27611382 27611382 PRJNA289590_P_NODE_22144_length_188_cov_0.820144_g21920_i0 PRJNA289590 22144 188 0.820144 1.54187072 Bufotes viridis 30338 Chordata Chordata 46.2 0.00106   NR CAK8609802.1 30338 g21920 i0 55.9 1.6595744680851101 34 15 54.3 0 80 181 1 34 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 312 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28905575 28905575 PRJNA289590_P_NODE_22148_length_187_cov_7.166667_g21924_i0 PRJNA289590 22148 187 7.166667 13.40166729 Lonchura striata 40157 Chordata Chordata 41.6 0.0473   NR XP_031362561.1 40157 g21924 i0 44.2 0.689839572192513 43 24 69 0 163 35 78 120 XP_031362561.1 LOW QUALITY PROTEIN: lysine-specific demethylase hairless [Lonchura striata] diamond 129 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Lonchura Lonchura striata
29000867 29000867 PRJNA289590_P_NODE_15308_length_231_cov_0.857143_g15084_i0 PRJNA289590 15308 231 0.857143 1.98000033 Staurois parvus 386267 Chordata Chordata 60.1 4.84e-10   NR CAI9620946.1 386267 g15084 i0 70.3 0.480519480519481 37 11 48.1 0 21 131 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29176187 29176187 PRJNA289590_P_NODE_16349_length_223_cov_1.097701_g16125_i0 PRJNA289590 16349 223 1.097701 2.44787323 Eukaryota 2759 Fungi Fungi 54.7 1.82e-6   NR KAJ1912152.1 417184 g16125 i0 59.2 2.94618834080717 49 18 65.9 1 77 223 140 186 KAJ1912152.1 Myosin type-2 heavy chain 1 [Mycoemilia scoparia] diamond 657 54.7 1 Eukaryota Opisthokonta Fungi Zoopagomycota Kickxellomycetes Kickxellales Kickxellaceae Mycoemilia Mycoemilia scoparia
29365529 29365529 PRJNA289590_P_NODE_27469_length_167_cov_0.881356_g27245_i0 PRJNA289590 27469 167 0.881356 1.47186452 Insecta 50557 Arthropoda Arthropoda 73.6 2.94e-14   NR KAE8742951.1 133901 g27245 i0 73.2 9.64670658682635 41 11 73.7 0 6 128 167 207 KAE8742951.1 Peroxiredoxin-1-like [Frankliniella occidentalis] diamond 1611 73.6 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Thysanoptera Thripidae Frankliniella Frankliniella occidentalis
29410878 29410878 PRJNA289590_P_NODE_27809_length_167_cov_0.881356_g27585_i0 PRJNA289590 27809 167 0.881356 1.47186452 Nephila pilipes 299642 Arthropoda Arthropoda 97.1 1.2999999999999998e-24   NR GFS40972.1 299642 g27585 i0 84.9 3.82634730538922 53 8 95.2 0 162 4 18 70 GFS40972.1 uncharacterized protein NPIL_596231 [Nephila pilipes] diamond 639 97.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Nephilidae Nephila Nephila pilipes
29617701 29617701 PRJNA289590_P_NODE_13910_length_244_cov_1.066667_g13686_i0 PRJNA289590 13910 244 1.066667 2.60266748 root 1 Root_unresolved Root_unresolved 98.6 8.200000000000001e-22   NR KAK6089148.1 40135 g13686 i0 75 1.67213114754098 68 17 83.6 0 24 227 42 109 KAK6089148.1 hypothetical protein P3W45_001868, partial [Vairimorpha bombi] diamond 408 98.6 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vairimorpha Vairimorpha bombi
29807376 29807376 PRJNA289590_P_NODE_17211_length_216_cov_3.053892_g16987_i0 PRJNA289590 17211 216 3.053892 6.59640672 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72.8 4.95e-15   NR ALS04207.1 335913 g16987 i0 67.3 2.15277777777778 52 17 72.2 0 2 157 19 70 ALS04207.1 60S ribosomal protein L38 [Acartia pacifica] diamond 465 73.2 0.994535519125683 Eukaryota Opisthokonta Metazoa Arthropoda Hexanauplia Calanoida Acartiidae Acartia Acartia pacifica
30471136 30471136 PRJNA289590_P_NODE_28913_length_165_cov_0.896552_g28689_i0 PRJNA289590 28913 165 0.896552 1.4793108 Beauveria 5581 Fungi Fungi 58.9 6.44e-9   NR KAF1736020.1 176275 g28689 i0 60 1.81818181818182 50 19 90.9 1 12 161 49 97 KAF1736020.1 hypothetical protein CRV24_004954 [Beauveria bassiana] diamond 300 58.9 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Cordycipitaceae Beauveria Beauveria bassiana
31022056 31022056 PRJNA289590_P_NODE_14735_length_235_cov_2.010753_g14511_i0 PRJNA289590 14735 235 2.010753 4.72526955 Zosterops borbonicus 364589 Chordata Chordata 44.3 0.00425   NR TRZ17703.1 364589 g14511 i0 34.4 0.778723404255319 61 37 74 1 211 38 32 92 TRZ17703.1 hypothetical protein HGM15179_009421 [Zosterops borbonicus] diamond 183 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
31179662 31179662 PRJNA289590_P_NODE_12335_length_260_cov_2.194313_g12111_i0 PRJNA289590 12335 260 2.194313 5.7052138 Erpetoichthys calabaricus 27687 Chordata Chordata 124 3.1599999999999997e-32   NR XP_051791274.1 27687 g12111 i0 77.4 7.76538461538462 84 18 95.8 1 4 252 121 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2019 124 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31608816 31608816 PRJNA289590_P_NODE_29536_length_164_cov_1.321739_g29312_i0 PRJNA289590 29536 164 1.321739 2.16765196 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.1 5.65e-7   NR WAQ96474.1 6604 g29312 i0 44.4 13.7743902439024 54 30 98.8 0 162 1 340 393 WAQ96474.1 VWA5A-like protein [Mya arenaria] diamond 2259 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
32729384 32729384 PRJNA289590_P_NODE_26120_length_169_cov_0.866667_g25896_i0 PRJNA289590 26120 169 0.866667 1.46466723 Fomitiporia mediterranea MF3/22 694068 Fungi Fungi 75.1 5.03e-14   NR XP_007265867.1 694068 g25896 i0 79.6 0.869822485207101 49 8 83.4 1 143 3 44 92 XP_007265867.1 uncharacterized protein FOMMEDRAFT_167489 [Fomitiporia mediterranea MF3/22] diamond 147 75.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Hymenochaetales Hymenochaetaceae Fomitiporia Fomitiporia mediterranea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;