RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA287283" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA287283 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28305852 28305852 PRJNA287283_P_NODE_6086_length_234_cov_1.187845_g5862_i0 PRJNA287283 6086 234 1.187845 2.7795573 Rhododendron williamsianum 262921 Plants Plants 43.5 0.011   NR KAE9449397.1 262921 g5862 i0 36.4 2.43589743589744 66 38 84.6 3 32 229 83 144 KAE9449397.1 hypothetical protein C3L33_18702, partial [Rhododendron williamsianum] diamond 570 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Rhododendron Rhododendron williamsianum
28734045 28734045 PRJNA287283_P_NODE_8747_length_182_cov_0.868217_g8523_i0 PRJNA287283 8747 182 0.868217 1.58015494 Streptophyta 35493 Plants Plants 99.4 1.46e-22   NR XP_024402545.1 3218 g8523 i0 78 15.5604395604396 59 13 97.3 0 181 5 362 420 XP_024402545.1 fructose-bisphosphate aldolase 1, chloroplastic-like [Physcomitrium patens] diamond 2832 100 0.994 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Funariales Funariaceae Physcomitrium Physcomitrium patens
29979368 29979368 PRJNA287283_P_NODE_5971_length_237_cov_1.092391_g5747_i0 PRJNA287283 5971 237 1.092391 2.58896667 Melia azedarach 155640 Plants Plants 43.5 0.0176   NR KAJ4713975.1 155640 g5747 i0 32.2 1.10126582278481 87 47 98.7 3 236 3 165 248 KAJ4713975.1 F-box protein [Melia azedarach] diamond 261 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Meliaceae Melia Melia azedarach
31482578 31482578 PRJNA287283_P_NODE_6716_length_216_cov_1.018405_g6492_i0 PRJNA287283 6716 216 1.018405 2.1997548 Closterium 34145 Plants Plants 50.1 5.81e-5   NR CAI5488445.1 2996811 g6492 i0 51.2 2.38888888888889 43 21 59.7 0 86 214 83 125 CAI5488445.1 unnamed protein product [Closterium sp. Naga37s-1] diamond 516 50.4 0.994047619047619 Eukaryota   Viridiplantae Streptophyta Zygnematophyceae Desmidiales Closteriaceae Closterium Closterium sp. Naga37s-1
31861692 31861692 PRJNA287283_P_NODE_8777_length_182_cov_0.868217_g8553_i0 PRJNA287283 8777 182 0.868217 1.58015494 Eukaryota 2759 Plants Plants 48.9 5.01e-5   NR XP_058729145.1 3911 g8553 i0 39 1.94505494505495 59 35 97.3 1 182 6 16 73 XP_058729145.1 SKP1-like protein 1A isoform X1 [Vicia villosa] diamond 354 49.3 0.991886409736308 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vicia Vicia villosa
32020063 32020063 PRJNA287283_P_NODE_3838_length_324_cov_1.214022_g3614_i0 PRJNA287283 3838 324 1.214022 3.93343128 Eukaryota 2759 Plants Plants 123 2.69e-30   NR KAJ8622128.1 3435 g3614 i0 58 26.7037037037037 100 42 92.6 0 19 318 65 164 KAJ8622128.1 hypothetical protein MRB53_030657 [Persea americana] diamond 8652 124 0.991935483870968 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
32603407 32603407 PRJNA287283_P_NODE_2640_length_402_cov_1.796562_g2416_i0 PRJNA287283 2640 402 1.796562 7.22217924 Lactuca saligna 75948 Plants Plants 45.4 0.0231   NR CAI9278555.1 75948 g2416 i0 33.7 0.686567164179104 92 60 68.7 1 55 330 92 182 CAI9278555.1 unnamed protein product [Lactuca saligna] diamond 276 45.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Lactuca Lactuca saligna

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;