RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA287283" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA287283 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27408101 27408101 PRJNA287283_P_NODE_3863_length_323_cov_0.829630_g3639_i0 PRJNA287283 3863 323 0.82963 2.6797049 Opisthokonta 33154 Platyhelminthes Platyhelminthes 147 1.96e-42   NR KAA3677532.1 34504 g3639 i0 67 23.2198142414861 97 32 90.1 0 291 1 1 97 KAA3677532.1 Ras-related C3 botulinum toxin substrate 1 [Paragonimus westermani] diamond 7500 148 0.993243243243243 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani
29554708 29554708 PRJNA287283_P_NODE_7590_length_196_cov_1.174825_g7366_i0 PRJNA287283 7590 196 1.174825 2.302657 Metazoa 33208 Platyhelminthes Platyhelminthes 130 3.1699999999999996e-35   NR CAX75879.1 6182 g7366 i0 98.5 184.05612244898 65 1 99.5 0 195 1 203 267 CAX75879.1 26S proteasome regulatory subunit T3 [Schistosoma japonicum] diamond 36075 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;