RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA287283" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA287283 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29284473 29284473 PRJNA287283_P_NODE_6709_length_216_cov_1.030675_g6485_i0 PRJNA287283 6709 216 1.030675 2.226258 Planctomycetota bacterium 2026780 Bacteria Bacteria 51.6 1.92e-5   NR MFH1732068.1 2026780 g6485 i0 66.7 0.625 45 13 59.7 1 8 136 511 555 MFH1732068.1 30S ribosomal protein S1 [Planctomycetota bacterium] diamond 135 51.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32603408 32603408 PRJNA287283_P_NODE_9180_length_180_cov_0.881890_g8956_i0 PRJNA287283 9180 180 0.88189 1.587402 Schlesneria sp. DSM 1 2762018 Bacteria Bacteria 65.1 1.53e-10   NR WP_373650989.1 3044399 g8956 i0 72.5 0.666666666666667 40 11 66.7 0 122 3 1 40 WP_373650989.1 spermidine synthase [Schlesneria sp. DSM 10557] diamond 120 65.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Schlesneria Schlesneria sp. DSM 10557

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;