RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA285816" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27074115 27074115 PRJNA285816_S_NODE_20062_length_180_cov_1.587786_g19960_i0 PRJNA285816 20062 180 1.587786 2.8580148 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 46.6 6.94e-4   NR MBQ2622798.1 2026720 g19960 i0 55 0.666666666666667 40 18 66.7 0 176 57 120 159 MBQ2622798.1 M1 family metallopeptidase [Candidatus Saccharibacteria bacterium] diamond 120 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
29442280 29442280 PRJNA285816_S_NODE_7570_length_258_cov_1.416268_g7468_i0 PRJNA285816 7570 258 1.416268 3.65397144 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 51.6 3.39e-5   NR HSX07112.1 2890869 g7468 i0 36.5 1.94186046511628 85 49 98.8 2 1 255 154 233 HSX07112.1 choice-of-anchor U domain-containing protein [Candidatus Saccharimonadia bacterium] diamond 501 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
32223960 32223960 PRJNA285816_S_NODE_5158_length_303_cov_1.874016_g5056_i0 PRJNA285816 5158 303 1.874016 5.67826848 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 48.9 4.94e-4   NR MEO6109687.1 2973664 g5056 i0 32.4 1.03960396039604 105 63 98 4 6 302 171 273 MEO6109687.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Candidatus Saccharimonadales bacterium] diamond 315 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;