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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA285816" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA285816 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20773609 20773609 PRJNA285816_S_NODE_3437_length_364_cov_2.580952_g3335_i0 PRJNA285816 3437 364 2.580952 9.39466528 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 164 1.01e-44   NR MBY0315590.1 2053517 g3335 i0 66.7 0.989010989010989 120 38 98.9 2 362 3 275 392 MBY0315590.1 elongation factor G [Bdellovibrionales bacterium] diamond 360 164 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26979194 26979194 PRJNA285816_S_NODE_8662_length_244_cov_1.569231_g8560_i0 PRJNA285816 8662 244 1.569231 3.82892364 Bdellovibrio sp. HCB185ZH 3394235 Bacteria Bacteria 51.6 2.9e-5   NR WP_413292987.1 3394235 g8560 i0 42.1 0.700819672131147 57 33 70.1 0 40 210 270 326 WP_413292987.1 kelch repeat-containing protein [Bdellovibrio sp. HCB185ZH] diamond 171 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB185ZH
27611351 27611351 PRJNA285816_S_NODE_20004_length_180_cov_2.511450_g19902_i0 PRJNA285816 20004 180 2.51145 4.52061 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 122 2.73e-33   NR MBX9767865.1 2053517 g19902 i0 93.2 0.983333333333333 59 4 98.3 0 2 178 119 177 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 177 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28116331 28116331 PRJNA285816_S_NODE_9085_length_239_cov_1.894737_g8983_i0 PRJNA285816 9085 239 1.894737 4.52842143 Oligoflexia bacterium 2599941 Bacteria Bacteria 63.9 5.72e-10   NR MFN7684285.1 2599941 g8983 i0 37.1 1.75732217573222 70 44 87.9 0 1 210 175 244 MFN7684285.1 hypothetical protein [Oligoflexia bacterium] diamond 420 63.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
29190065 29190065 PRJNA285816_S_NODE_14129_length_204_cov_1.341935_g14027_i0 PRJNA285816 14129 204 1.341935 2.7375474 Halobacteriovorax sp. 2020862 Bacteria Bacteria 74.7 8.42e-14   NR MAE57540.1 2020862 g14027 i0 50.7 0.985294117647059 67 29 98.5 1 2 202 242 304 MAE57540.1 SAM-dependent methyltransferase [Halobacteriovorax sp.] diamond 201 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp.
29221695 29221695 PRJNA285816_S_NODE_19349_length_182_cov_2.451128_g19247_i0 PRJNA285816 19349 182 2.451128 4.46105296 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 70.5 4.74e-13   NR NQZ20306.1 2053517 g19247 i0 55.9 0.972527472527473 59 26 97.3 0 179 3 125 183 NQZ20306.1 hypothetical protein [Bdellovibrionales bacterium] diamond 177 70.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29347869 29347869 PRJNA285816_S_NODE_29389_length_162_cov_0.920354_g29287_i0 PRJNA285816 29389 162 0.920354 1.49097348 Bdellovibrio sp. 28201 Bacteria Bacteria 89.7 1.83e-19   NR MBC7420993.1 28201 g29287 i0 83 3.92592592592593 53 9 98.1 0 2 160 323 375 MBC7420993.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 636 89.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29473815 29473815 PRJNA285816_S_NODE_20690_length_178_cov_1.527132_g20588_i0 PRJNA285816 20690 178 1.527132 2.71829496 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 112 2.31e-29   NR MBX9767865.1 2053517 g20588 i0 94.9 0.99438202247191 59 3 99.4 0 2 178 28 86 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 177 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30800704 30800704 PRJNA285816_S_NODE_14234_length_203_cov_4.285714_g14132_i0 PRJNA285816 14234 203 4.285714 8.69999942 Oligoflexia bacterium 2599941 Bacteria Bacteria 58.9 1e-8   NR HQH29226.1 2599941 g14132 i0 52.9 0.753694581280788 51 24 75.4 0 159 7 28 78 HQH29226.1 dual specificity protein phosphatase [Oligoflexia bacterium] diamond 153 58.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
31071382 31071382 PRJNA285816_S_NODE_10035_length_230_cov_2.784530_g9933_i0 PRJNA285816 10035 230 2.78453 6.404419 Pseudomonadati 3379134 Bacteria Bacteria 109 3.93e-26   NR MCO5114635.1 2026715 g9933 i0 68.4 3.96521739130435 76 24 99.1 0 229 2 359 434 MCO5114635.1 class II fumarate hydratase [Pseudobdellovibrionaceae bacterium] diamond 912 109 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31401556 31401556 PRJNA285816_S_NODE_15896_length_196_cov_1.061224_g15794_i0 PRJNA285816 15896 196 1.061224 2.07999904 Bdellovibrio sp. 28201 Bacteria Bacteria 82.4 2.98e-17   NR RME18556.1 28201 g15794 i0 56.7 1.02551020408163 67 27 99.5 1 195 1 76 142 RME18556.1 MAG: SDR family oxidoreductase [Bdellovibrio sp.] diamond 201 82.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
32603388 32603388 PRJNA285816_S_NODE_14640_length_201_cov_3.565789_g14538_i0 PRJNA285816 14640 201 3.565789 7.16723589 Oligoflexia bacterium 2599941 Bacteria Bacteria 42 0.0396   NR MBC7385957.1 2599941 g14538 i0 37.5 0.835820895522388 56 31 83.6 1 194 27 159 210 MBC7385957.1 hypothetical protein [Oligoflexia bacterium] diamond 168 42 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;