RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA283169 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26947460 26947460 PRJNA283169_P_NODE_7402_length_165_cov_0.862069_g7339_i0 PRJNA283169 7402 165 0.862069 1.42241385 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.4 2.43e-4   NR MBV8176842.1 2026799 g7339 i0 64.9 1.34545454545455 37 13 67.3 0 116 6 56 92 MBV8176842.1 DUF3560 domain-containing protein [Verrucomicrobiota bacterium] diamond 222 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27579580 27579580 PRJNA283169_S_NODE_1984_length_200_cov_0.052980_g1970_i0 PRJNA283169 1984 200 0.05298 0.10596 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.2 0.00107   NR MEI6076722.1 2026799 g1970 i0 55.3 0.57 38 17 57 0 199 86 197 234 MEI6076722.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 114 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27895271 27895271 PRJNA283169_S_NODE_1145_length_251_cov_0.123762_g1131_i0 PRJNA283169 1145 251 0.123762 0.31064262 Nibricoccus sp. IMCC34717 3034021 Bacteria Bacteria 43.1 0.0286   NR WP_404423401.1 3034021 g1131 i0 25.3 0.896414342629482 75 55 89.6 1 22 246 239 312 WP_404423401.1 LacI family DNA-binding transcriptional regulator [Nibricoccus sp. IMCC34717] diamond 225 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus sp. IMCC34717
28148127 28148127 PRJNA283169_S_NODE_2365_length_186_cov_0.116788_g2351_i0 PRJNA283169 2365 186 0.116788 0.21722568 Limisphaerales bacterium 2052186 Bacteria Bacteria 45.4 3.73e-4   NR MEI9961334.1 2052186 g2351 i0 58.6 0.467741935483871 29 12 46.8 0 183 97 30 58 MEI9961334.1 hypothetical protein [Limisphaerales bacterium] diamond 87 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium
28179297 28179297 PRJNA283169_P_NODE_2906_length_243_cov_1.587629_g2843_i0 PRJNA283169 2906 243 1.587629 3.85793847 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 134 1.6299999999999998e-35   NR RFC52986.1 2026799 g2843 i0 90.1 0.876543209876543 71 7 87.7 0 213 1 1 71 RFC52986.1 MAG: Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Verrucomicrobiota bacterium] diamond 213 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28368892 28368892 PRJNA283169_P_NODE_3046_length_237_cov_2.186170_g2983_i0 PRJNA283169 3046 237 2.18617 5.1812229 Opitutaceae bacterium 2006848 Bacteria Bacteria 58.9 4.21e-8   NR MBL9207032.1 2006848 g2983 i0 52.7 0.69620253164557 55 26 69.6 0 185 21 1 55 MBL9207032.1 GNAT family N-acetyltransferase [Opitutaceae bacterium] diamond 165 58.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30295700 30295700 PRJNA283169_P_NODE_2112_length_282_cov_0.875536_g2050_i0 PRJNA283169 2112 282 0.875536 2.46901152 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 72.4 2.17e-12   NR MDB6120228.1 2026800 g2050 i0 77.1 0.51063829787234 48 11 51.1 0 275 132 691 738 MDB6120228.1 glycosyl transferase group 1 [Verrucomicrobiaceae bacterium] diamond 144 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30327397 30327397 PRJNA283169_P_NODE_4372_length_202_cov_0.980392_g4309_i0 PRJNA283169 4372 202 0.980392 1.98039184 Limisphaera sp. 2838792 Bacteria Bacteria 80.9 8.05e-16   NR MCS7090330.1 2838792 g4309 i0 62.7 3.98019801980198 67 24 99.5 1 2 202 65 130 MCS7090330.1 hypothetical protein [Limisphaera sp.] diamond 804 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Limisphaeraceae Limisphaera Limisphaera sp.
31622698 31622698 PRJNA283169_S_NODE_1756_length_210_cov_0.093168_g1742_i0 PRJNA283169 1756 210 0.093168 0.1956528 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 42.4 0.00879   NR HYZ72762.1 2201154 g1742 i0 38.9 1.02857142857143 72 38 94.3 2 1 198 27 98 HYZ72762.1 hypothetical protein [Chthoniobacterales bacterium] diamond 216 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32273360 32273360 PRJNA283169_P_NODE_7218_length_165_cov_0.896552_g7155_i0 PRJNA283169 7218 165 0.896552 1.4793108 Verrucomicrobiota 74201 Bacteria Bacteria 102 3e-24   NR MSU62835.1 2024890 g7155 i0 83.6 5 55 9 100 0 1 165 197 251 MSU62835.1 hypothetical protein [Pedosphaera sp.] diamond 825 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
32823781 32823781 PRJNA283169_P_NODE_4300_length_203_cov_1.077922_g4237_i0 PRJNA283169 4300 203 1.077922 2.18818166 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 47.8 3.77e-4   NR HXP82587.1 2499141 g4237 i0 39.3 0.901477832512315 61 36 90.1 1 14 196 43 102 HXP82587.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 183 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;