RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_phylum = "Candidatus Microgenomatota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Microgenomatota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA283169 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28874111 28874111 PRJNA283169_P_NODE_5948_length_175_cov_2.031746_g5885_i0 PRJNA283169 5948 175 2.031746 3.5555555 Candidatus Microgenomates bacterium 2093373 Bacteria Bacteria 48.1 1.86e-4   NR MBI2040350.1 2093373 g5885 i0 80.8 0.445714285714286 26 5 44.6 0 2 79 368 393 MBI2040350.1 tyrosine--tRNA ligase [Candidatus Microgenomates bacterium] diamond 78 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Microgenomatota         Candidatus Microgenomates bacterium
31907414 31907414 PRJNA283169_S_NODE_2657_length_177_cov_0.132812_g2643_i0 PRJNA283169 2657 177 0.132812 0.23507724 Candidatus Microgenomates bacterium 2093373 Bacteria Bacteria 67.8 2.21e-11   NR RJR29333.1 2093373 g2643 i0 75 1.3728813559322 40 10 67.8 0 164 45 535 574 RJR29333.1 MAG: alanine--tRNA ligase [Candidatus Microgenomates bacterium] diamond 243 67.8 1 Bacteria Bacteria candidate phyla   Candidatus Microgenomatota         Candidatus Microgenomates bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;