RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA283169 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15674453 15674453 PRJNA283169_P_NODE_1033_length_387_cov_1.047337_g971_i0 PRJNA283169 1033 387 1.047337 4.05319419 Campylobacterales bacterium 2268180 Bacteria Bacteria 246 5.64e-79   NR MDD3467355.1 2268180 g971 i0 94.6 3 129 7 100 0 387 1 107 235 MDD3467355.1 aspartate-semialdehyde dehydrogenase [Campylobacterales bacterium] diamond 1161 246 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium
32666256 32666256 PRJNA283169_P_NODE_7480_length_164_cov_0.913043_g7417_i0 PRJNA283169 7480 164 0.913043 1.49739052 Helicobacter pylori 210 Bacteria Bacteria 64.3 7.34e-12   NR GAA8798126.1 210 g7417 i0 100 0.49390243902439 27 0 49.4 0 2 82 6 32 GAA8798126.1 hypothetical protein Kyoto149A_1450 [Helicobacter pylori] diamond 81 64.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32823780 32823780 PRJNA283169_P_NODE_3840_length_213_cov_1.243902_g3777_i0 PRJNA283169 3840 213 1.243902 2.64951126 Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 1802243 Bacteria Bacteria 125 3.77e-33   NR OHD85708.1 1802243 g3777 i0 81.4 0.985915492957746 70 13 98.6 0 211 2 65 134 OHD85708.1 MAG: hypothetical protein A3J39_05920 [Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8] diamond 210 125 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;