RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA283169 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30502565 30502565 PRJNA283169_S_NODE_3133_length_166_cov_0.863248_g3119_i0 PRJNA283169 3133 166 0.863248 1.43299168 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 92.4 3.6e-20   NR EJK66451.1 159749 g3119 i0 88.7 8.51204819277108 53 6 95.8 0 161 3 378 430 EJK66451.1 hypothetical protein THAOC_12633 [Thalassiosira oceanica] diamond 1413 92.8 0.995689655172414 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
31622696 31622696 PRJNA283169_P_NODE_6516_length_169_cov_0.866667_g6453_i0 PRJNA283169 6516 169 0.866667 1.46466723 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 46.6 6.1e-4   NR CAJ1964303.1 2856 g6453 i0 42.6 1.20710059171598 68 20 94.1 3 160 2 246 309 CAJ1964303.1 unnamed protein product [Cylindrotheca closterium] diamond 204 46.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;