RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 7 ✖

bioproject 1

  • PRJNA283169 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26821128 26821128 PRJNA283169_P_NODE_4301_length_203_cov_1.071429_g4238_i0 PRJNA283169 4301 203 1.071429 2.17500087 Methanosarcinales archaeon 2250255 Archaea Archaea 51.6 4.39e-6   NR HUV84925.1 2250255 g4238 i0 47.7 0.650246305418719 44 21 62.1 1 141 16 8 51 HUV84925.1 hypothetical protein [Methanosarcinales archaeon] diamond 132 51.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
27010737 27010737 PRJNA283169_P_NODE_2082_length_283_cov_1.367521_g2020_i0 PRJNA283169 2082 283 1.367521 3.87008443 Methanosarcina sp. 2213 Archaea Archaea 104 3.12e-24   NR HET8686774.1 2213 g2020 i0 59.1 0.985865724381625 93 36 96.5 1 6 278 94 186 HET8686774.1 hypothetical protein [Methanosarcina sp.] diamond 279 104 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28684928 28684928 PRJNA283169_S_NODE_2327_length_187_cov_0.101449_g2313_i0 PRJNA283169 2327 187 0.101449 0.18970963 Methanogenium sp. 2196 Archaea Archaea 48.5 1.65e-4   NR MFA5397717.1 2196 g2313 i0 37.7 1.23529411764706 77 30 97.9 3 187 5 68 142 MFA5397717.1 hypothetical protein [Methanogenium sp.] diamond 231 48.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
28747876 28747876 PRJNA283169_P_NODE_1547_length_324_cov_1.360000_g1485_i0 PRJNA283169 1547 324 1.36 4.4064 Methanogenium sp. 2196 Archaea Archaea 62.4 9.77e-9   NR MFA5397716.1 2196 g1485 i0 34.4 0.861111111111111 93 56 81.5 2 320 57 6 98 MFA5397716.1 hypothetical protein [Methanogenium sp.] diamond 279 62.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
29789664 29789664 PRJNA283169_P_NODE_1131_length_370_cov_2.542056_g1069_i0 PRJNA283169 1131 370 2.542056 9.4056072 Methanosarcina sp. 2213 Archaea Archaea 77 5.32e-16   NR HET8689498.1 2213 g1069 i0 61 0.940540540540541 59 23 47.8 0 49 225 1 59 HET8689498.1 HNH endonuclease signature motif containing protein [Methanosarcina sp.] diamond 348 77 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30579403 30579403 PRJNA283169_S_NODE_3213_length_165_cov_0.112069_g3199_i0 PRJNA283169 3213 165 0.112069 0.18491385 Candidatus Methanophagales archaeon 2056316 Archaea Archaea 62.8 8.77e-10   NR MCD6209781.1 2056316 g3199 i0 54.5 1 55 25 100 0 1 165 189 243 MCD6209781.1 hypothetical protein [Candidatus Methanophagales archaeon] diamond 165 62.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales     Candidatus Methanophagales archaeon
32223934 32223934 PRJNA283169_P_NODE_7878_length_163_cov_0.894737_g7815_i0 PRJNA283169 7878 163 0.894737 1.45842131 Methanomicrobiales archaeon 2184052 Archaea Archaea 55.5 4.15e-7   NR MDD1669841.1 2184052 g7815 i0 59.5 3.47852760736196 37 15 68.1 0 40 150 156 192 MDD1669841.1 DUF2341 domain-containing protein [Methanomicrobiales archaeon] diamond 567 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;