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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 31 ✖

bioproject 1

  • PRJNA283169 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26616956 26616956 PRJNA283169_P_NODE_5841_length_177_cov_1.578125_g5778_i0 PRJNA283169 5841 177 1.578125 2.79328125 Bacteria 2 Bacteria Bacteria 90.9 9.14e-21   NR MCB1113562.1 2052156 g5778 i0 72.7 2.89830508474576 55 15 93.2 0 173 9 42 96 MCB1113562.1 50S ribosomal protein L3 [Chlamydiia bacterium] diamond 513 90.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
26838862 26838862 PRJNA283169_S_NODE_1441_length_227_cov_0.123596_g1427_i0 PRJNA283169 1441 227 0.123596 0.28056292 Pirellula 123 Bacteria Bacteria 118 6.23e-29   NR HUP77528.1 117 g1427 i0 73 1.95594713656388 74 20 97.8 0 2 223 283 356 HUP77528.1 isoleucine--tRNA ligase [Pirellula sp.] diamond 444 118 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp.
26947460 26947460 PRJNA283169_P_NODE_7402_length_165_cov_0.862069_g7339_i0 PRJNA283169 7402 165 0.862069 1.42241385 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.4 2.43e-4   NR MBV8176842.1 2026799 g7339 i0 64.9 1.34545454545455 37 13 67.3 0 116 6 56 92 MBV8176842.1 DUF3560 domain-containing protein [Verrucomicrobiota bacterium] diamond 222 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27042527 27042527 PRJNA283169_P_NODE_462_length_569_cov_1.648077_g405_i0 PRJNA283169 462 569 1.648077 9.37755813 Candidatus Scalindua sp. 2268189 Bacteria Bacteria 87.4 4.45e-17   NR MDR4496880.1 2268189 g405 i0 52.8 0.764499121265378 72 34 38 0 555 340 142 213 MDR4496880.1 FRG domain-containing protein [Candidatus Scalindua sp.] diamond 435 87.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua sp.
27168728 27168728 PRJNA283169_P_NODE_3742_length_215_cov_1.240964_g3679_i0 PRJNA283169 3742 215 1.240964 2.6680726 Humisphaera borealis 2807512 Bacteria Bacteria 103 8.690000000000001e-27   NR WP_206294221.1 2807512 g3679 i0 77.8 0.87906976744186 63 14 87.9 0 16 204 1 63 WP_206294221.1 PilZ domain-containing protein [Humisphaera borealis] diamond 189 103 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
27327042 27327042 PRJNA283169_P_NODE_3023_length_238_cov_1.613757_g2960_i0 PRJNA283169 3023 238 1.613757 3.84074166 Pontiellaceae bacterium B12227 3035703 Bacteria Bacteria 79.3 5.71e-16   NR MDF7822817.1 3035703 g2960 i0 59.7 0.781512605042017 62 24 76.9 1 43 225 1 62 MDF7822817.1 hypothetical protein [Pontiellaceae bacterium B12227] diamond 186 79.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Pontiellaceae   Pontiellaceae bacterium B12227
27579580 27579580 PRJNA283169_S_NODE_1984_length_200_cov_0.052980_g1970_i0 PRJNA283169 1984 200 0.05298 0.10596 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.2 0.00107   NR MEI6076722.1 2026799 g1970 i0 55.3 0.57 38 17 57 0 199 86 197 234 MEI6076722.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 114 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27895271 27895271 PRJNA283169_S_NODE_1145_length_251_cov_0.123762_g1131_i0 PRJNA283169 1145 251 0.123762 0.31064262 Nibricoccus sp. IMCC34717 3034021 Bacteria Bacteria 43.1 0.0286   NR WP_404423401.1 3034021 g1131 i0 25.3 0.896414342629482 75 55 89.6 1 22 246 239 312 WP_404423401.1 LacI family DNA-binding transcriptional regulator [Nibricoccus sp. IMCC34717] diamond 225 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus sp. IMCC34717
28148127 28148127 PRJNA283169_S_NODE_2365_length_186_cov_0.116788_g2351_i0 PRJNA283169 2365 186 0.116788 0.21722568 Limisphaerales bacterium 2052186 Bacteria Bacteria 45.4 3.73e-4   NR MEI9961334.1 2052186 g2351 i0 58.6 0.467741935483871 29 12 46.8 0 183 97 30 58 MEI9961334.1 hypothetical protein [Limisphaerales bacterium] diamond 87 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium
28179297 28179297 PRJNA283169_P_NODE_2906_length_243_cov_1.587629_g2843_i0 PRJNA283169 2906 243 1.587629 3.85793847 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 134 1.6299999999999998e-35   NR RFC52986.1 2026799 g2843 i0 90.1 0.876543209876543 71 7 87.7 0 213 1 1 71 RFC52986.1 MAG: Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Verrucomicrobiota bacterium] diamond 213 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28368892 28368892 PRJNA283169_P_NODE_3046_length_237_cov_2.186170_g2983_i0 PRJNA283169 3046 237 2.18617 5.1812229 Opitutaceae bacterium 2006848 Bacteria Bacteria 58.9 4.21e-8   NR MBL9207032.1 2006848 g2983 i0 52.7 0.69620253164557 55 26 69.6 0 185 21 1 55 MBL9207032.1 GNAT family N-acetyltransferase [Opitutaceae bacterium] diamond 165 58.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28558598 28558598 PRJNA283169_P_NODE_907_length_408_cov_0.991643_g845_i0 PRJNA283169 907 408 0.991643 4.04590344 Gimesia chilikensis 2605989 Bacteria Bacteria 86.3 1.01e-16   NR WP_149339017.1 2605989 g845 i0 51.9 1.16176470588235 79 38 58.1 0 171 407 281 359 WP_149339017.1 CynX/NimT family MFS transporter [Gimesia chilikensis] diamond 474 86.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia chilikensis
28874107 28874107 PRJNA283169_P_NODE_4068_length_208_cov_0.899371_g4005_i0 PRJNA283169 4068 208 0.899371 1.87069168 Planctomycetales bacterium 2053591 Bacteria Bacteria 54.7 1.43e-6   NR MCA9184911.1 2053591 g4005 i0 44.4 2.01923076923077 72 31 92.3 4 3 194 5187 5257 MCA9184911.1 M10 family metallopeptidase C-terminal domain-containing protein [Planctomycetales bacterium] diamond 420 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium
29063752 29063752 PRJNA283169_P_NODE_7728_length_163_cov_1.350877_g7665_i0 PRJNA283169 7728 163 1.350877 2.20192951 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 96.7 1.0300000000000001e-22   NR MCX5712588.1 2035772 g7665 i0 79.6 0.993865030674847 54 11 99.4 0 1 162 161 214 MCX5712588.1 peptide chain release factor N(5)-glutamine methyltransferase [Candidatus Omnitrophota bacterium] diamond 162 96.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29316201 29316201 PRJNA283169_P_NODE_6089_length_173_cov_1.669355_g6026_i0 PRJNA283169 6089 173 1.669355 2.88798415 Chlamydiota bacterium 2081524 Bacteria Bacteria 53.1 1.39e-6   NR NGX62301.1 2081524 g6026 i0 43.9 1.95953757225434 57 32 98.8 0 3 173 124 180 NGX62301.1 hypothetical protein [Chlamydiota bacterium] diamond 339 53.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29758126 29758126 PRJNA283169_P_NODE_2871_length_245_cov_1.311224_g2808_i0 PRJNA283169 2871 245 1.311224 3.2124988 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.9 0.0145   NR MEE8359917.1 2035772 g2808 i0 47.5 0.489795918367347 40 21 49 0 162 43 260 299 MEE8359917.1 O-antigen ligase family protein [Candidatus Omnitrophota bacterium] diamond 120 43.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30136930 30136930 PRJNA283169_P_NODE_7812_length_163_cov_0.912281_g7749_i0 PRJNA283169 7812 163 0.912281 1.48701803 Candidatus Scalindua sp. 2268189 Bacteria Bacteria 82.8 5.95e-17   NR MCR4343334.1 2268189 g7749 i0 72.2 0.993865030674847 54 15 99.4 0 162 1 41 94 MCR4343334.1 phage major capsid protein [Candidatus Scalindua sp.] diamond 162 82.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua sp.
30295700 30295700 PRJNA283169_P_NODE_2112_length_282_cov_0.875536_g2050_i0 PRJNA283169 2112 282 0.875536 2.46901152 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 72.4 2.17e-12   NR MDB6120228.1 2026800 g2050 i0 77.1 0.51063829787234 48 11 51.1 0 275 132 691 738 MDB6120228.1 glycosyl transferase group 1 [Verrucomicrobiaceae bacterium] diamond 144 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30327397 30327397 PRJNA283169_P_NODE_4372_length_202_cov_0.980392_g4309_i0 PRJNA283169 4372 202 0.980392 1.98039184 Limisphaera sp. 2838792 Bacteria Bacteria 80.9 8.05e-16   NR MCS7090330.1 2838792 g4309 i0 62.7 3.98019801980198 67 24 99.5 1 2 202 65 130 MCS7090330.1 hypothetical protein [Limisphaera sp.] diamond 804 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Limisphaeraceae Limisphaera Limisphaera sp.
30579395 30579395 PRJNA283169_P_NODE_5373_length_184_cov_1.896296_g5310_i0 PRJNA283169 5373 184 1.896296 3.48918464 Aureliella helgolandensis 2527968 Bacteria Bacteria 46.2 9.99e-4   NR WP_145078911.1 2527968 g5310 i0 39.7 1.89130434782609 58 35 94.6 0 182 9 1322 1379 WP_145078911.1 hypothetical protein [Aureliella helgolandensis] diamond 348 46.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella helgolandensis
30850030 30850030 PRJNA283169_P_NODE_7894_length_163_cov_0.894737_g7831_i0 PRJNA283169 7894 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 78.6 1.58e-15   NR QKK07071.1 2026780 g7831 i0 64.8 1.98773006134969 54 19 99.4 0 1 162 197 250 QKK07071.1 MAG: S8 family serine peptidase [Planctomycetota bacterium] diamond 324 78.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30990540 30990540 PRJNA283169_S_NODE_1874_length_205_cov_0.064103_g1860_i0 PRJNA283169 1874 205 0.064103 0.13141115 Gemmataceae bacterium 2052164 Bacteria Bacteria 50.8 1.64e-5   NR MBX9682125.1 2052164 g1860 i0 44 0.731707317073171 50 28 73.2 0 152 3 1 50 MBX9682125.1 hypothetical protein [Gemmataceae bacterium] diamond 150 50.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
31432923 31432923 PRJNA283169_S_NODE_2036_length_198_cov_0.120805_g2022_i0 PRJNA283169 2036 198 0.120805 0.2391939 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.5 0.0109   NR HEY3320097.1 2026780 g2022 i0 44.7 1.10606060606061 38 21 57.6 0 50 163 323 360 HEY3320097.1 glycosyl hydrolase family 28-related protein [Planctomycetota bacterium] diamond 219 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31622698 31622698 PRJNA283169_S_NODE_1756_length_210_cov_0.093168_g1742_i0 PRJNA283169 1756 210 0.093168 0.1956528 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 42.4 0.00879   NR HYZ72762.1 2201154 g1742 i0 38.9 1.02857142857143 72 38 94.3 2 1 198 27 98 HYZ72762.1 hypothetical protein [Chthoniobacterales bacterium] diamond 216 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31717627 31717627 PRJNA283169_P_NODE_4817_length_194_cov_0.951724_g4754_i0 PRJNA283169 4817 194 0.951724 1.84634456 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 50.8 2.64e-5   NR MEI7999654.1 2035772 g4754 i0 41.3 0.974226804123711 63 35 97.4 1 1 189 114 174 MEI7999654.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 189 50.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31780745 31780745 PRJNA283169_P_NODE_3237_length_231_cov_0.857143_g3174_i0 PRJNA283169 3237 231 0.857143 1.98000033 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0443   NR MBN9118449.1 2026780 g3174 i0 33.3 0.935064935064935 72 44 88.3 1 210 7 116 187 MBN9118449.1 protein kinase [Planctomycetota bacterium] diamond 216 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31780754 31780754 PRJNA283169_S_NODE_2037_length_198_cov_0.107383_g2023_i0 PRJNA283169 2037 198 0.107383 0.21261834 Planctomycetota bacterium 2026780 Bacteria Bacteria 120 7.659999999999999e-31   NR MCY2982620.1 2026780 g2023 i0 83.1 2.95454545454545 65 11 98.5 0 2 196 251 315 MCY2982620.1 hypothetical protein [Planctomycetota bacterium] diamond 585 120 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32273360 32273360 PRJNA283169_P_NODE_7218_length_165_cov_0.896552_g7155_i0 PRJNA283169 7218 165 0.896552 1.4793108 Verrucomicrobiota 74201 Bacteria Bacteria 102 3e-24   NR MSU62835.1 2024890 g7155 i0 83.6 5 55 9 100 0 1 165 197 251 MSU62835.1 hypothetical protein [Pedosphaera sp.] diamond 825 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
32477139 32477139 PRJNA283169_S_NODE_2219_length_191_cov_0.176056_g2205_i0 PRJNA283169 2219 191 0.176056 0.33626696 Phycisphaerae bacterium 2026778 Bacteria Bacteria 49.3 7.87e-5   NR MBL9150778.1 2026778 g2205 i0 55.8 1.30366492146597 43 18 66 1 131 6 5 47 MBL9150778.1 ATP-binding protein [Phycisphaerae bacterium] diamond 249 49.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
32760733 32760733 PRJNA283169_P_NODE_1740_length_308_cov_1.532819_g1678_i0 PRJNA283169 1740 308 1.532819 4.72108252 Victivallales bacterium 2212475 Bacteria Bacteria 92.8 5.920000000000001e-21   NR MBT7298823.1 2212475 g1678 i0 46.9 0.954545454545455 98 52 95.5 0 305 12 102 199 MBT7298823.1 hypothetical protein [Victivallales bacterium] diamond 294 92.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32823781 32823781 PRJNA283169_P_NODE_4300_length_203_cov_1.077922_g4237_i0 PRJNA283169 4300 203 1.077922 2.18818166 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 47.8 3.77e-4   NR HXP82587.1 2499141 g4237 i0 39.3 0.901477832512315 61 36 90.1 1 14 196 43 102 HXP82587.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 183 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;