RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA283169" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA283169 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26648422 26648422 PRJNA283169_S_NODE_1561_length_220_cov_0.894737_g1547_i0 PRJNA283169 1561 220 0.894737 1.9684214 Paramoebidae 200887 Discosea other_Eukaryota 113 9.47e-28   NR ACO50132.1 308475 g1547 i0 65.8 4.96363636363636 73 25 99.5 0 2 220 139 211 ACO50132.1 elongation factor 1 alpha, partial [Paramoeba branchiphila] diamond 1092 114 0.991228070175439 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
28527083 28527083 PRJNA283169_S_NODE_3387_length_162_cov_1.336283_g3373_i0 PRJNA283169 3387 162 1.336283 2.16477846 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 57.8 2.02e-8   NR KAH3757229.1 1580589 g3373 i0 64.9 0.685185185185185 37 13 68.5 0 112 2 46 82 KAH3757229.1 hypothetical protein Pelo_10959 [Pelomyxa schiedti] diamond 111 57.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31306368 31306368 PRJNA283169_P_NODE_1015_length_389_cov_1.117647_g953_i0 PRJNA283169 1015 389 1.117647 4.34764683 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 82.8 1.89e-15   NR KAH3765284.1 1580589 g953 i0 41.1 0.994858611825193 129 64 99.5 1 2 388 293 409 KAH3765284.1 kinesin family member 3 [Pelomyxa schiedti] diamond 387 82.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;