RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA280983" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA280983 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28053143 28053143 PRJNA280983_P_NODE_2825_length_415_cov_1.114754_g2710_i0 PRJNA280983 2825 415 1.114754 4.6262291 Paraphysoderma sedebokerense 1500003 Fungi Fungi 106 1.5e-23   NR KAI9141245.1 1500003 g2710 i0 40.8 0.939759036144578 130 65 90.4 3 16 390 376 498 KAI9141245.1 hypothetical protein BKA69DRAFT_1139368 [Paraphysoderma sedebokerense] diamond 390 106 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;