RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA280983" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA280983 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26630958 26630958 PRJNA280983_P_NODE_10301_length_165_cov_0.879310_g10186_i0 PRJNA280983 10301 165 0.87931 1.4508615 Lawsonella 1847725 Bacteria Bacteria 111 3.95e-28   NR WP_290599322.1 1847725 g10186 i0 100 1 55 0 100 0 1 165 89 143 WP_290599322.1 MULTISPECIES: hypothetical protein [Lawsonella] diamond 165 111 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
28337424 28337424 PRJNA280983_P_NODE_11566_length_151_cov_5.313725_g11451_i0 PRJNA280983 11566 151 5.313725 8.02372475 Galactobacter valiniphilus 2676122 Bacteria Bacteria 40.8 0.0464   NR WP_119424843.1 2676122 g11451 i0 39.6 0.95364238410596 48 27 95.4 1 7 150 42 87 WP_119424843.1 DedA family protein [Galactobacter valiniphilus] diamond 144 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Galactobacter Galactobacter valiniphilus
29663136 29663136 PRJNA280983_P_NODE_10870_length_163_cov_0.894737_g10755_i0 PRJNA280983 10870 163 0.894737 1.45842131 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 43.9 0.00473   NR HEY2692445.1 2339230 g10755 i0 43.4 0.975460122699387 53 29 95.7 1 162 7 128 180 HEY2692445.1 MBL fold metallo-hydrolase [Streptosporangiaceae bacterium] diamond 159 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
32572073 32572073 PRJNA280983_P_NODE_10599_length_164_cov_0.886957_g10484_i0 PRJNA280983 10599 164 0.886957 1.45460948 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 58.5 3.4e-8   NR HUP69390.1 2201156 g10484 i0 51.7 2.15853658536585 60 20 97 2 159 1 1653 1710 HUP69390.1 kelch repeat-containing protein [Acidimicrobiales bacterium] diamond 354 58.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32666239 32666239 PRJNA280983_P_NODE_10800_length_163_cov_0.894737_g10685_i0 PRJNA280983 10800 163 0.894737 1.45842131 Saccharopolyspora indica 1229659 Bacteria Bacteria 90.5 1.13e-21   NR WP_334270782.1 1229659 g10685 i0 88.7 0.975460122699387 53 6 97.5 0 160 2 57 109 WP_334270782.1 hypothetical protein, partial [Saccharopolyspora indica] diamond 159 90.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora indica
32872747 32872747 PRJNA280983_P_NODE_9920_length_167_cov_0.864407_g9805_i0 PRJNA280983 9920 167 0.864407 1.44355969 Dietzia 37914 Bacteria Bacteria 47.8 2.26e-4   NR WP_230928816.1 983873 g9805 i0 67.6 6.64670658682635 34 11 61.1 0 166 65 428 461 WP_230928816.1 DUF349 domain-containing protein [Dietzia aurantiaca] diamond 1110 48.1 0.993762993762994 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;