RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA280983" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358754 27358754 PRJNA280983_P_NODE_9143_length_177_cov_1.195312_g9028_i0 PRJNA280983 9143 177 1.195312 2.11570224 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 69.3 6.04e-12   NR XP_005780238.1 280463 g9028 i0 61.8 1.86440677966102 55 21 93.2 0 11 175 22 76 XP_005780238.1 hypothetical protein EMIHUDRAFT_415549 [Emiliania huxleyi CCMP1516] diamond 330 69.3 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
27990190 27990190 PRJNA280983_P_NODE_11045_length_162_cov_0.902655_g10930_i0 PRJNA280983 11045 162 0.902655 1.4623011 Pavlovales sp. CCMP2436 483367 Haptophyta other_Eukaryota 92.4 2.94e-20   NR KAJ1616819.1 483367 g10930 i0 79.2 3.92592592592593 53 11 98.1 0 160 2 171 223 KAJ1616819.1 argininosuccinate synthase [Pavlovales sp. CCMP2436] diamond 636 92.4 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;